View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10113_low_4 (Length: 581)
Name: NF10113_low_4
Description: NF10113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10113_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 55263860 - 55263569
Alignment:
| Q |
1 |
cacataagcttgtgatttgtgaagagaatgaacattgtaattaacattgcttcaatttttattttaggtttacaaattggttgagcacattcgtgctaaa |
100 |
Q |
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| T |
55263860 |
cacataagcttgtgatttgtgaagagaatgaacattgtaattaacattgcttcaatttttattttaggtttacaaattggttgagcacattcgtgctaaa |
55263761 |
T |
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| Q |
101 |
ggtggaaatatcacaagggaggctggtccagttcagggtgggacaactgttattgcctttgtgaaggatcctgatggctacacttttgcacttgtccaaa |
200 |
Q |
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| T |
55263760 |
ggtggaaatatcacaagggaggctggtccagttcaaggtgggacaactgttattgcctttgtgaaggatcctgatggctacacttttgcacttgtccaaa |
55263661 |
T |
|
| Q |
201 |
gacctatagttcacgacccattctgtcaaataagtcttcgcgttggtgatttagaacgtgccataaagttttatgaaaaggtaacaatcgaa |
292 |
Q |
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| T |
55263660 |
gacctatagttcacgacccattctgtcaaataagtcttcgcgttggtgatttagaacgtgccataaagttttatgaaaaggtaacaatcgaa |
55263569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 55270724 - 55270433
Alignment:
| Q |
1 |
cacataagcttgtgatttgtgaagagaatgaacattgtaattaacattgcttcaatttttattttaggtttacaaattggttgagcacattcgtgctaaa |
100 |
Q |
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| T |
55270724 |
cacataagcttgtgatttgtgaagagaatgaacattgtaattaacattgcttcaatttttattttaggtttacaaattggttgagcacattcgtgctaaa |
55270625 |
T |
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| Q |
101 |
ggtggaaatatcacaagggaggctggtccagttcagggtgggacaactgttattgcctttgtgaaggatcctgatggctacacttttgcacttgtccaaa |
200 |
Q |
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| T |
55270624 |
ggtggaaacatcacaagggaggctggtccagttcaaggtgggacaactgttattgcctttgtgaaggatcctgatggctacacttttgcacttgttcaaa |
55270525 |
T |
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| Q |
201 |
gacctatagttcacgacccattctgtcaaataagtcttcgcgttggtgatttagaacgtgccataaagttttatgaaaaggtaacaatcgaa |
292 |
Q |
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| T |
55270524 |
gacctatagttcacgacccattctgtcaaataagtctccgcgttggtgatttagaacgtgccataaagttttatgaaaaggtaacaatcgaa |
55270433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 332 - 566
Target Start/End: Complemental strand, 55263539 - 55263305
Alignment:
| Q |
332 |
atttcctgtctgcgaagagtcaagattagtacttgtactatttgatagcttttgcttgtatgtacaaaatagaatcagagaattgtatttgatgagttat |
431 |
Q |
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| T |
55263539 |
atttcctgtgtgcgaagagtcaagattagtacttgtactatttgatagcttttggttgtatgtacaaaatagaatcagagaattgtatttgatgagt--- |
55263443 |
T |
|
| Q |
432 |
gtatgatttaattatgcattatttaaaccaaatgtggtttattaaccgatgc----tatgttcttatggatcatatttacataggctttgggcttgaagg |
527 |
Q |
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| T |
55263442 |
-tatgatttaattatgcattatttaaaccaaatgtggtttattaaccgatgctatatatgttcttatggatcatatttacataggctttgggcttgaagg |
55263344 |
T |
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| Q |
528 |
tagtgaggaaggttgataatcctgagaacaaggtgatgt |
566 |
Q |
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| T |
55263343 |
tggtgaggaaggttgataatcctgagaacaaggtgatgt |
55263305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 332 - 566
Target Start/End: Complemental strand, 55270403 - 55270169
Alignment:
| Q |
332 |
atttcctgtctgcgaagagtcaagattagtacttgtactatttgatagcttttgcttgtatgtacaaaatagaatcagagaattgtatttgatgagttat |
431 |
Q |
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| T |
55270403 |
atttcctgtgtgtgaagagtcaagattagtacttgtactatttgatagcttttggttgtatgtacaaaatagaatcagagaattgtatttgatgagt--- |
55270307 |
T |
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| Q |
432 |
gtatgatttaattatgcattatttaaaccaaatgtggtttattaaccgatgc----tatgttcttatggatcatatttacataggctttgggcttgaagg |
527 |
Q |
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| T |
55270306 |
-tatgatttaattatgcattatttaaaccaaatgtggtttattaaccgatgctatatatgttcttatggatcatatttacataggctttgggcttgaagg |
55270208 |
T |
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| Q |
528 |
tagtgaggaaggttgataatcctgagaacaaggtgatgt |
566 |
Q |
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| T |
55270207 |
tggtgaggaaggttgataatcctgagaacaaggtgatgt |
55270169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 62 - 177
Target Start/End: Complemental strand, 8302632 - 8302517
Alignment:
| Q |
62 |
ttttaggtttacaaattggttgagcacattcgtgctaaaggtggaaatatcacaagggaggctggtccagttcagggtgggacaactgttattgcctttg |
161 |
Q |
| |
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|||||||| |||||||| ||||| || || ||||| |||||||| |||| |||||| ||||||||||| || ||||||| |||||||||||||| |
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| T |
8302632 |
ttttaggtctacaaatttgttgaaaacgcccgggctaagggtggaaaagtcactagggagcctggtccagttagtggcgggacaagtgttattgcctttg |
8302533 |
T |
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| Q |
162 |
tgaaggatcctgatgg |
177 |
Q |
| |
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|| ||||||||||| |
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| T |
8302532 |
tggctgatcctgatgg |
8302517 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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