View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10113_low_41 (Length: 246)

Name: NF10113_low_41
Description: NF10113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10113_low_41
NF10113_low_41
[»] chr1 (2 HSPs)
chr1 (1-237)||(13985564-13985806)
chr1 (11-79)||(13983375-13983446)
[»] chr3 (2 HSPs)
chr3 (1-169)||(3970687-3970860)
chr3 (52-168)||(3999022-3999143)


Alignment Details
Target: chr1 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 237
Target Start/End: Complemental strand, 13985806 - 13985564
Alignment:
Q  1 ctactttttgagaattgatttaaaataatttttgactaagtttctggtttaagtattcctgcaactgccgaccggctgctaatccaatattgctgagaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||| | ||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  13985806 ctactttttgagaattgatttaaaataatttttgactaattgtctagttttagtattcctgcagctgccgaccggctgctaatccaatattgctgagaaa 13985707  T
Q  101 tactacta----aagtat--ttgtaatggaagtttaaactaataccttttctttccttttctaataatttatcctttaacccactttggttcgtctaatc 194  Q
    ||||||||    ||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||     
T  13985706 tactactatttaaagtatacttgtaatggaagtttaaactaataccctttctttccttttctaataatttatcctttaacccactttggttcgtctcatg 13985607  T
Q  195 gtgttggcttgagacgttgaaattagaggtcttactcaacctt 237  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  13985606 gtgttggcttgagacgttgaaattagaggtcttactcaacctt 13985564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 79
Target Start/End: Complemental strand, 13983446 - 13983375
Alignment:
Q  11 agaattgatttaaaataatttttgactaagtttctggtt---taagtattcctgcaactgccgaccggctgc 79  Q
    |||||| ||||||| |||||||||||||| ||| ||||    | |||||| |||||||||||||||||||||    
T  13983446 agaattaatttaaattaatttttgactaattttttggtagtattagtattgctgcaactgccgaccggctgc 13983375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 3970687 - 3970860
Alignment:
Q  1 ctactttttgagaattgatttaaaataatttttgactaagtttctggtttaagtattcctgcaactgccgaccggctgctaatccaatattgctgagaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||| | ||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||    
T  3970687 ctactttttgagaattgatttaaaataatttttgactaattgtctagttttagtattcctgcagctgccgaccggctgctaatccaatattgctgagaaa 3970786  T
Q  101 tactacta----aagtat--ttgtaatggaagtttaaactaataccttttctttccttttctaataatttatcct 169  Q
    || |||||    ||||||  ||||||||||||||||||||| ||| |||||| | ||||||||||||||||||||    
T  3970787 tattactatttaaagtatacttgtaatggaagtttaaacta-tactttttctcttcttttctaataatttatcct 3970860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 52 - 168
Target Start/End: Complemental strand, 3999143 - 3999022
Alignment:
Q  52 agtattcctgcaactgccgaccggctgctaatccaatattgctgagaaatactacta----aagtat--ttgtaatggaagtttaaactaataccttttc 145  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||    ||||||  ||||||||||||||||||||| ||| |||||    
T  3999143 agtattcctgcagctgccgaccggctgctaatccaatattgctgagaaatattactatttaaagtatacttgtaatggaagtttaaacta-tactttttc 3999045  T
Q  146 tttccttttctaataatttatcc 168  Q
    | | |||||||||||||||||||    
T  3999044 tcttcttttctaataatttatcc 3999022  T

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