View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10113_low_42 (Length: 244)
Name: NF10113_low_42
Description: NF10113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10113_low_42 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 39564545 - 39564771
Alignment:
| Q |
1 |
cctaggtttcttcgcatttcctgcaagttcagtacaagtatttgataatttatacttcacaataatgctttgaaagttcaatatggtcttttgtcactgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39564545 |
cctaggtttcttcgcatttcctgcaagttcagtacaagtatttgataatttatacttcacaataatgctttgaaagttcaatatggtcttttgtcactgt |
39564644 |
T |
|
| Q |
101 |
ccgtgtaaagatttttatactgtcaatcaaattagaaccgtttgactttaattatacctacttctaaagtgacacatatgattgaatgtgatttgcaatg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39564645 |
ccgtgtaaagatttttatactgtcaatcaaattagaaccgtttgactttaattatacctacttctaaagtgacacatatgattgaatgtgatttgcaatg |
39564744 |
T |
|
| Q |
201 |
taaaactttttacacttctgtgtatca |
227 |
Q |
| |
|
|||| |||||||||||| |||||||| |
|
|
| T |
39564745 |
taaatttttttacacttcagtgtatca |
39564771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 39353387 - 39353317
Alignment:
| Q |
15 |
catttcctgcaagttcagtacaagtatttgataatttatacttcacaataatgctttgaaagttcaatatg |
85 |
Q |
| |
|
|||||||||||| | |||| ||||||||||||||| | |||||||||| | || ||||||||||||||||| |
|
|
| T |
39353387 |
catttcctgcaaatccagtccaagtatttgataatatctacttcacaacagtggtttgaaagttcaatatg |
39353317 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 46766090 - 46766134
Alignment:
| Q |
140 |
gtttgactttaattatacctacttctaaagtgacacatatgattg |
184 |
Q |
| |
|
||||||||||||| |||||| |||||||||| ||||||||||||| |
|
|
| T |
46766090 |
gtttgactttaatcatacctgcttctaaagtcacacatatgattg |
46766134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 85
Target Start/End: Complemental strand, 39338544 - 39338474
Alignment:
| Q |
15 |
catttcctgcaagttcagtacaagtatttgataatttatacttcacaataatgctttgaaagttcaatatg |
85 |
Q |
| |
|
|||||||||||| | |||| ||||||||| ||||| | |||||||||| |||| ||| |||||| |||||| |
|
|
| T |
39338544 |
catttcctgcaaatccagtccaagtatttaataatatctacttcacaacaatggttttaaagtttaatatg |
39338474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 147 - 193
Target Start/End: Complemental strand, 36639799 - 36639753
Alignment:
| Q |
147 |
tttaattatacctacttctaaagtgacacatatgattgaatgtgatt |
193 |
Q |
| |
|
|||||| ||| ||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
36639799 |
tttaatcataactacttctaaagtcacacatatgattgcatgtgatt |
36639753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 184
Target Start/End: Original strand, 32408102 - 32408147
Alignment:
| Q |
139 |
cgtttgactttaattatacctacttctaaagtgacacatatgattg |
184 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||| |||| |||| |
|
|
| T |
32408102 |
cgtttgactttaatcataactacttctaaagtgacaaatatcattg |
32408147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University