View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10113_low_44 (Length: 241)
Name: NF10113_low_44
Description: NF10113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10113_low_44 |
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| [»] chr1 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 13986235 - 13986012
Alignment:
| Q |
18 |
ctttgatgcttccgccgctacctccaccgccgttggctcttcttttcttccccgtcggaatcatggcggcgcttgttgttcttgctttctcaccttcgga |
117 |
Q |
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| T |
13986235 |
ctttgatgcttccgccgctacctccaccgccgttggctcttcttttcttccccgtcggaatcatggcggcgcttgttgttctcgctttctcaccttcgga |
13986136 |
T |
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| Q |
118 |
gaatgttaaaaacgtcgtcgtttattcttcttcttcaggaatcgcgaattcgaaacggtgaaatcgttggatctgtgatacattttcagtttcttgaatg |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13986135 |
gaatgttaaaaacgtcgtcgtttattcttcttcttcaggaatcgcgaattcgaaacggtgaaatcgttggatctgtgatacattttcagtttcttgaatg |
13986036 |
T |
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| Q |
218 |
ttccgatcggtttctgatttgatt |
241 |
Q |
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| T |
13986035 |
ttccgatcggtttctgatttgatt |
13986012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 3970049 - 3970275
Alignment:
| Q |
18 |
ctttgatgcttccgccgctacctccaccgccgttggctcttcttttcttccccgtcggaatcatggcggcgcttgttgttcttgctttctcaccttcgga |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3970049 |
ctttgatgcttccgccgctacctccaccgccgttggctcttcttttcttcccggtcggaatcatggcggcgcttgttgttctcgctttctcaccttcgga |
3970148 |
T |
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| Q |
118 |
gaatgttaaaaacgtcgtcgttta---ttcttcttcttcaggaatcgcgaattcgaaacggtgaaatcgttggatctgtgatacattttcagtttcttga |
214 |
Q |
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| T |
3970149 |
gaatgttaaaaacgtcgtcgtttattcttcttcttcttcaggaatcgcgaattcgaaacggtgaaatcgttggatctgtgatacattttcagtttcttga |
3970248 |
T |
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| Q |
215 |
atgttccgatcggtttctgatttgatt |
241 |
Q |
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| T |
3970249 |
atgttccgatcggtttctgatttgatt |
3970275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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