View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10113_low_45 (Length: 238)
Name: NF10113_low_45
Description: NF10113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10113_low_45 |
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| [»] chr2 (4 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 19 - 238
Target Start/End: Original strand, 15442560 - 15442780
Alignment:
| Q |
19 |
aaggctttgacggtttcatattttcatttttgaagccaaactgtatggaaatttaacatttcgtaacacccaaggatcttcataaaaatattt-cataaa |
117 |
Q |
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| T |
15442560 |
aaggctgtgacggtttcatattttaatttttgaagccaaactgtagggaaatttaacatttcgtaacacccaaggatcttcataaaaatattttcataaa |
15442659 |
T |
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| Q |
118 |
taataaaactgaaattttgcagaaattatacagaaattcacaatggctttcttctttgaatcacctatatatagtttactttcttcggccattctaaata |
217 |
Q |
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| T |
15442660 |
taataaaattgaaattttgcagaaattatacagaaattcacaatggctttcttctttgaatcgcctatatatagtttagtttcttcggccattcaaaata |
15442759 |
T |
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| Q |
218 |
tccataacatcgtaaagcttc |
238 |
Q |
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| T |
15442760 |
tccataacatcgtaaagcttc |
15442780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 25 - 186
Target Start/End: Original strand, 15461818 - 15461975
Alignment:
| Q |
25 |
ttgacggtttcatattttcatttttgaagccaaactgtatggaaatttaacatttcgtaacacccaaggatcttcataaaaatatttcataaataataaa |
124 |
Q |
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| T |
15461818 |
ttgacagtttctcattttaatttttgaagccaaactatagggaaatttaacatttcgtaacacccaagcatcttc-----------tgaaaaataataaa |
15461906 |
T |
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| Q |
125 |
actgaaattttgcagaaattatacagaaattca-------caatggctttcttctttgaatcacctata |
186 |
Q |
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| T |
15461907 |
acttaaattttgcagaaattttacggaaattcacaataggcaatggctttcttctttgaatcgcctata |
15461975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 25 - 92
Target Start/End: Original strand, 15451919 - 15451986
Alignment:
| Q |
25 |
ttgacggtttcatattttcatttttgaagccaaactgtatggaaatttaacatttcgtaacacccaag |
92 |
Q |
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| T |
15451919 |
ttgacagtttctcattttaatttttgaagccaaactatagggaaatttaacatttcgtaacacccaag |
15451986 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 120 - 163
Target Start/End: Original strand, 15451991 - 15452034
Alignment:
| Q |
120 |
ataaaactgaaattttgcagaaattatacagaaattcacaatgg |
163 |
Q |
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| T |
15451991 |
ataaaactgaaattttgcagaaattttacggaaattcacaatgg |
15452034 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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