View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10113_low_47 (Length: 229)
Name: NF10113_low_47
Description: NF10113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10113_low_47 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 13 - 229
Target Start/End: Original strand, 45322397 - 45322614
Alignment:
| Q |
13 |
atcacaaatttacgccatcgagggagccattcaagaatgaagcaagattaagaagcactggtgttaggatttacttagttatgaatttaatcaataatac |
112 |
Q |
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| T |
45322397 |
atcacaaatttacgccatcgagggagccattcaagaatgaggcaagattaagaagcactggtgttaggatttacttagttatgaatttaatcaataatac |
45322496 |
T |
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| Q |
113 |
catacaacgactacctttgttgaatgcatattgaannnnnnnatccgattgagtaag-ttttgtccaaatcagcggccgcttcatttggcagctccacag |
211 |
Q |
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| T |
45322497 |
catacaacgattacctttgttgaatgcatattgaatttttttatccgatcgagtaagtttttttccaaatcagtggccgcttcatttggcagctccacag |
45322596 |
T |
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| Q |
212 |
aaacattagagattgttt |
229 |
Q |
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| T |
45322597 |
aaacattagagattgttt |
45322614 |
T |
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Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 26 - 111
Target Start/End: Original strand, 14237574 - 14237658
Alignment:
| Q |
26 |
gccatcgagggagccattcaagaatgaagcaagattaagaagcactggtgttaggatttacttagttatgaatttaatcaataata |
111 |
Q |
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| T |
14237574 |
gccatcaagggagccattcaagaataaggcaagattaagaag-tccagtgttaggatttgtttagttatgaacttaatcaataata |
14237658 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 229
Target Start/End: Original strand, 14237728 - 14237781
Alignment:
| Q |
176 |
ccaaatcagcggccgcttcatttggcagctccacagaaacattagagattgttt |
229 |
Q |
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| T |
14237728 |
ccaaatcagcagcaggatcagttggcagctcgacagaaacattagagattgttt |
14237781 |
T |
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