View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10113_low_48 (Length: 229)
Name: NF10113_low_48
Description: NF10113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10113_low_48 |
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Alignment Details
Target: chr7 (Bit Score: 134; Significance: 7e-70; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 27814346 - 27814170
Alignment:
| Q |
1 |
agatggaaataatgttggactaggaaactcggggtatcatcgctttagggtttaggaaatcacacaagtggattgaacaccatatcttcacccaaaatct |
100 |
Q |
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| T |
27814346 |
agatggaaataatgttggactaggaaactcgggatatcat-gctttaggttttaggaaatcacacaagtggattgaacaccacattttcatccaaaatct |
27814248 |
T |
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| Q |
101 |
taaaggctaatagatatatggatcctctcaacattcactttttaatctaatgttaggcttctaactaagactagcaaa |
178 |
Q |
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| T |
27814247 |
taaaggctaatagatatatggatcctctcaacattcactttttaatctaatgtttggcttctaattcagactatcaaa |
27814170 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 23 - 130
Target Start/End: Complemental strand, 27806538 - 27806431
Alignment:
| Q |
23 |
ggaaactcggggtatcatcgctttagggtttaggaaatcacacaagtggattgaacaccatatcttcacccaaaatcttaaaggctaatagatatatgga |
122 |
Q |
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| T |
27806538 |
ggaaactcagggtatcatcgttttagattttggacaattacacaaatggattgaacaccaaatcttcacctaaaatcttaaaggccaatggatatatgaa |
27806439 |
T |
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| Q |
123 |
tcctctca |
130 |
Q |
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| T |
27806438 |
tcctctca |
27806431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 102
Target Start/End: Original strand, 43220491 - 43220535
Alignment:
| Q |
58 |
aatcacacaagtggattgaacaccatatcttcacccaaaatctta |
102 |
Q |
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| T |
43220491 |
aatctcacaagtggtttgaacaccatatcttcattcaaaatctta |
43220535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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