View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10113_low_51 (Length: 216)
Name: NF10113_low_51
Description: NF10113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10113_low_51 |
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Alignment Details
Target: chr1 (Bit Score: 77; Significance: 7e-36; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 198
Target Start/End: Complemental strand, 5480931 - 5480738
Alignment:
| Q |
1 |
gcgatcagggctgaatatactgaatctaatacatgcattgtcattgtcattatgaacaannnnnnnaaacccacatgattaccgaaatatattttaacta |
100 |
Q |
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| T |
5480931 |
gcgatcaggattgaatatactgaatcttttacatgcattgtcatt------atgaacaattttttttaaaccacatgattaccgaaatatattttaacta |
5480838 |
T |
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| Q |
101 |
ttccaaggaatttggaggggaatatttttaataa--ttttgnnnnnnnnnnnnggtattgaaggtgagggaattggaaacggatccactattcaattcgg |
198 |
Q |
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|||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5480837 |
ttccaaggaatttggaggggaatatttttaataatttttttttttttttttttgttattgaaggtgagggaattggaaacggatccactattcaattcgg |
5480738 |
T |
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