View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10113_low_7 (Length: 465)
Name: NF10113_low_7
Description: NF10113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10113_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 264; Significance: 1e-147; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 18 - 454
Target Start/End: Complemental strand, 52993677 - 52993214
Alignment:
| Q |
18 |
tgtcatataggcgaaatgtggtttaccctcatataaaaataaagtttagagatc----------taaagattcttcagttttggaacttcattgcatata |
107 |
Q |
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| T |
52993677 |
tgtcatatagacgaaatgtggtttaccatcatgtaaaaataaagtttagagatcccatgtaatttaaagattctttagttttagaccttcattgcatata |
52993578 |
T |
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| Q |
108 |
acagtgcataaattaatgggttaataagcttttgtgtagttcagatgtcggtggtaagttacatacatcaaatcaattttgcactatgatatgaataaaa |
207 |
Q |
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| T |
52993577 |
actgtgcaggaattaatgggttaataggcttttgtgtagttcagatgtcggtggtaagttacatacatcgcatcaattgtgcactatgatatgaataaag |
52993478 |
T |
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| Q |
208 |
attttatgttccttggctcnnnnnnngtttgtatattgcttttaatgatttttagcttttatatatcttta-----------------cacatnnnnnnn |
290 |
Q |
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| T |
52993477 |
tttttatgttccttggctcaaaaaaagtttgtatattgcttttaatgatttttagcttttatatatctttacaaggaactatgcattgcacataaaaaaa |
52993378 |
T |
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| Q |
291 |
ntggtcaaaataaattgattggttatgtgttgttgtggggacagttaaggcattgaatcaagcaagactagaggcaaatataagaatatatggaaatgaa |
390 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52993377 |
ttggtaaaaataaattgattggttatgtgttgttgtggggacagttaaggcattgaatcaagcaagactagaggcaaatataagaatatatggaaatgaa |
52993278 |
T |
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| Q |
391 |
aatcacaaaaagaaatggccaagtatttactcagttgcttctggtttgctactattgctttcat |
454 |
Q |
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| T |
52993277 |
aatcacaaaaagaaatggccaagtatttactcagttgcttctggtttgctactattgctttcat |
52993214 |
T |
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