View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10113_low_9 (Length: 434)

Name: NF10113_low_9
Description: NF10113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10113_low_9
NF10113_low_9
[»] chr1 (11 HSPs)
chr1 (177-424)||(8935647-8935894)
chr1 (19-162)||(8935394-8935537)
chr1 (263-424)||(8959287-8959448)
chr1 (285-424)||(8924144-8924283)
chr1 (363-406)||(8947380-8947423)
chr1 (31-145)||(29418534-29418648)
chr1 (66-123)||(13114718-13114775)
chr1 (94-145)||(50773187-50773238)
chr1 (95-139)||(11135798-11135842)
chr1 (95-139)||(11430500-11430544)
chr1 (95-139)||(14094078-14094122)
[»] chr3 (5 HSPs)
chr3 (31-139)||(38928023-38928130)
chr3 (65-123)||(50661569-50661627)
chr3 (95-139)||(357819-357863)
chr3 (99-139)||(10769806-10769846)
chr3 (89-145)||(46237117-46237173)
[»] chr2 (5 HSPs)
chr2 (95-146)||(6315710-6315761)
chr2 (45-145)||(24895295-24895394)
chr2 (95-145)||(38104301-38104351)
chr2 (95-139)||(1110257-1110301)
chr2 (95-139)||(42182948-42182992)
[»] chr7 (7 HSPs)
chr7 (95-139)||(22786210-22786254)
chr7 (105-145)||(41508362-41508402)
chr7 (66-145)||(24539171-24539250)
chr7 (98-139)||(46067997-46068038)
chr7 (95-139)||(19840962-19841006)
chr7 (99-139)||(26703521-26703561)
chr7 (95-139)||(45909515-45909559)
[»] chr5 (2 HSPs)
chr5 (89-139)||(32401176-32401226)
chr5 (95-139)||(42224668-42224712)
[»] scaffold0204 (1 HSPs)
scaffold0204 (40-145)||(26886-26989)
[»] chr4 (4 HSPs)
chr4 (66-139)||(25719161-25719234)
chr4 (40-145)||(48339364-48339467)
chr4 (95-139)||(13069999-13070043)
chr4 (95-139)||(16178642-16178686)
[»] chr8 (1 HSPs)
chr8 (95-139)||(1205886-1205930)
[»] chr6 (2 HSPs)
chr6 (95-139)||(4595801-4595845)
chr6 (95-139)||(19090292-19090336)


Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 177 - 424
Target Start/End: Original strand, 8935647 - 8935894
Alignment:
Q  177 cgaaaattttgattttaaaatgggaaacaagagcgcaattaagtagactaaaatgtaaagttgtacttaccaaataggtaaggtggacaaccgacgtgaa 276  Q
    ||||||||| ||||||||||   ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8935647 cgaaaatttcgattttaaaacaagaaacaagagcgcaattaagtagacgaaaatgtaaagttgaacttaccaaataggtaaggtggacaaccgacgtgaa 8935746  T
Q  277 atcccaatgttgttatacatgggcttgacggatcattgcattcaaggctccaagtggtttctctcaaatagcaatctcggactccgcaatgatcttcaca 376  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8935747 atcccaatgttgttatacatgggcttgacggatcattgcattcaaggctccaagtggtttctctcaaatagcaatctcggactccgcaatgatcttcaca 8935846  T
Q  377 agcaccagtcatccaagaaacttcaaatccactcaccaacatcctatg 424  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||    
T  8935847 agcaccagtcatccaagaaacttcaaaaccactcaccaacatcctatg 8935894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 19 - 162
Target Start/End: Original strand, 8935394 - 8935537
Alignment:
Q  19 ttaacaacattttcttttcatcactttctctaacacccactttttatattgggttaaataaatatgagttctacgttttggaaatggaacccatataaag 118  Q
    ||||||||||||||||||||||||| |||| ||||| ||||||||||||||| |||||||||||||||| |||| ||||||| ||| ||| || ||||||    
T  8935394 ttaacaacattttcttttcatcactctctccaacactcactttttatattggattaaataaatatgagtcctacattttggacatgcaactcacataaag 8935493  T
Q  119 tggtgaaatatacattgatttaatccagctattaagtgagtgtt 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  8935494 tggtgaaatatacattgatttaatccagctattaagtgagtgtt 8935537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 263 - 424
Target Start/End: Original strand, 8959287 - 8959448
Alignment:
Q  263 acaaccgacgtgaaatcccaatgttgttatacatgggcttgacggatcattgcattcaaggctccaagtggtttctctcaaatagcaatctcggactccg 362  Q
    ||||||||| ||||| ||||  |||||| ||||| |  | |||||||  | ||||||||| |||||||||||||||||||||||||||||| ||| |||     
T  8959287 acaaccgacatgaaaacccagcgttgttctacatagcatagacggattgtcgcattcaagactccaagtggtttctctcaaatagcaatctgggattcca 8959386  T
Q  363 caatgatcttcacaagcaccagtcatccaagaaacttcaaatccactcaccaacatcctatg 424  Q
    |||||||||||||||| |||| |||||||||||||||||||||||| ||||||||| |||||    
T  8959387 caatgatcttcacaaggaccactcatccaagaaacttcaaatccacccaccaacatgctatg 8959448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 285 - 424
Target Start/End: Original strand, 8924144 - 8924283
Alignment:
Q  285 gttgttatacatgggcttgacggatcattgcattcaaggctccaagtggtttctctcaaatagcaatctcggactccgcaatgatcttcacaagcaccag 384  Q
    |||||| ||||| | || |||||||||| ||||||||| |||||||||||||||||||||||||||||| |   ||| ||| |||||||||||| ||||     
T  8924144 gttgttctacatagactagacggatcatcgcattcaagactccaagtggtttctctcaaatagcaatctggttttccacaaagatcttcacaaggaccac 8924243  T
Q  385 tcatccaagaaacttcaaatccactcaccaacatcctatg 424  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  8924244 tcatccaagaaacttcaaaaccactcaccaacatcctatg 8924283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 363 - 406
Target Start/End: Original strand, 8947380 - 8947423
Alignment:
Q  363 caatgatcttcacaagcaccagtcatccaagaaacttcaaatcc 406  Q
    |||||||||||||||| |||| ||||||||||||||||||||||    
T  8947380 caatgatcttcacaaggaccactcatccaagaaacttcaaatcc 8947423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 31 - 145
Target Start/End: Complemental strand, 29418648 - 29418534
Alignment:
Q  31 tcttttcatcactttctctaacacccactttttatattgggttaaataaatatgagttctacgttttggaaatggaacccatataaagtggtgaaatata 130  Q
    |||||| |||||| ||| || ||| |||||||| |||||||| |||| ||| |  | |||||  ||||||||| |||| || |||||||||||| |||||    
T  29418648 tcttttgatcactctctatatcactcactttttttattgggtgaaatcaatgtaggatctacactttggaaatagaactcacataaagtggtgagatata 29418549  T
Q  131 cattgatttaatcca 145  Q
    |||| |||| |||||    
T  29418548 cattaattttatcca 29418534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 66 - 123
Target Start/End: Original strand, 13114718 - 13114775
Alignment:
Q  66 attgggttaaataaatatgagttctacgttttggaaatggaacccatataaagtggtg 123  Q
    |||||||||||| ||| || ||| ||| |||||||||||||| |||||||||||||||    
T  13114718 attgggttaaatcaatgtgggttatacattttggaaatggaatccatataaagtggtg 13114775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 94 - 145
Target Start/End: Original strand, 50773187 - 50773238
Alignment:
Q  94 ttttggaaatggaacccatataaagtggtgaaatatacattgatttaatcca 145  Q
    |||||||||||||||||| ||||||||||| || ||| |||||||| |||||    
T  50773187 ttttggaaatggaacccacataaagtggtggaacatatattgattttatcca 50773238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 11135842 - 11135798
Alignment:
Q  95 tttggaaatggaacccatataaagtggtgaaatatacattgattt 139  Q
    ||||||||||||||||| |||||||||||  | ||||||||||||    
T  11135842 tttggaaatggaacccacataaagtggtgggacatacattgattt 11135798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 11430544 - 11430500
Alignment:
Q  95 tttggaaatggaacccatataaagtggtgaaatatacattgattt 139  Q
    ||||||||||||||||| |||||||||||  | ||||||||||||    
T  11430544 tttggaaatggaacccacataaagtggtgggacatacattgattt 11430500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 139
Target Start/End: Original strand, 14094078 - 14094122
Alignment:
Q  95 tttggaaatggaacccatataaagtggtgaaatatacattgattt 139  Q
    ||||||||||||||||| |||||||||||  | ||||||||||||    
T  14094078 tttggaaatggaacccacataaagtggtgggacatacattgattt 14094122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 31 - 139
Target Start/End: Original strand, 38928023 - 38928130
Alignment:
Q  31 tcttttcatcactttctctaacacccactttttatattgggttaaataaatatgagttctacgttttggaaatggaacccatataaagtggtgaaatata 130  Q
    |||||| ||||||||||||||||| |||| ||| |||||||| |||| ||| | ||  ||||  ||||||||||||||||||||||||| | |  |||||    
T  38928023 tcttttgatcactttctctaacactcactcttt-tattgggtgaaatcaatgtaagacctacactttggaaatggaacccatataaagtagagggatata 38928121  T
Q  131 cattgattt 139  Q
    |||||||||    
T  38928122 cattgattt 38928130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 65 - 123
Target Start/End: Original strand, 50661569 - 50661627
Alignment:
Q  65 tattgggttaaataaatatgagttctacgttttggaaatggaacccatataaagtggtg 123  Q
    ||||||||||||| ||| || ||  ||| |||||||||||||||||| |||||||||||    
T  50661569 tattgggttaaatcaatgtgggtcatacattttggaaatggaacccacataaagtggtg 50661627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 357863 - 357819
Alignment:
Q  95 tttggaaatggaacccatataaagtggtgaaatatacattgattt 139  Q
    ||||||||||||||||| ||||||||||||   ||||||||||||    
T  357863 tttggaaatggaacccacataaagtggtgaggcatacattgattt 357819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 10769806 - 10769846
Alignment:
Q  99 gaaatggaacccatataaagtggtgaaatatacattgattt 139  Q
    |||||||||||||||||||||||||  | ||||||||||||    
T  10769806 gaaatggaacccatataaagtggtgggacatacattgattt 10769846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 89 - 145
Target Start/End: Original strand, 46237117 - 46237173
Alignment:
Q  89 ctacgttttggaaatggaacccatataaagtggtgaaatatacattgatttaatcca 145  Q
    |||| |||| ||||||||||||| |||||||||||  | |||||||||||| |||||    
T  46237117 ctacattttagaaatggaacccacataaagtggtgggacatacattgatttcatcca 46237173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 95 - 146
Target Start/End: Complemental strand, 6315761 - 6315710
Alignment:
Q  95 tttggaaatggaacccatataaagtggtgaaatatacattgatttaatccag 146  Q
    ||||||||||||||| ||||||||||||| || |||||||||||| ||||||    
T  6315761 tttggaaatggaacctatataaagtggtggaacatacattgatttcatccag 6315710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 45 - 145
Target Start/End: Original strand, 24895295 - 24895394
Alignment:
Q  45 tctctaacacccactttttatattgggttaaataaatatgagttctacgttttggaaatggaacccatataaagtggtgaaatatacattgatttaatcc 144  Q
    |||||||||| |||| |||  |||||||||||| ||| || ||  |||  |||||||||||||| || ||||| ||||| ||||||||||||||| ||||    
T  24895295 tctctaacactcactctttc-attgggttaaatcaatgtgggtcatacactttggaaatggaactcacataaaatggtggaatatacattgattttatcc 24895393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 145
Target Start/End: Complemental strand, 38104351 - 38104301
Alignment:
Q  95 tttggaaatggaacccatataaagtggtgaaatatacattgatttaatcca 145  Q
    ||||| ||||||||||| ||||||||||| || |||||||||||| |||||    
T  38104351 tttgggaatggaacccaaataaagtggtggaacatacattgattttatcca 38104301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 1110301 - 1110257
Alignment:
Q  95 tttggaaatggaacccatataaagtggtgaaatatacattgattt 139  Q
    ||||||||||||||||| |||||||||||  | ||||||||||||    
T  1110301 tttggaaatggaacccacataaagtggtgggacatacattgattt 1110257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 42182992 - 42182948
Alignment:
Q  95 tttggaaatggaacccatataaagtggtgaaatatacattgattt 139  Q
    ||||||||||||||||| |||||||||||  | ||||||||||||    
T  42182992 tttggaaatggaacccacataaagtggtgggacatacattgattt 42182948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 22786254 - 22786210
Alignment:
Q  95 tttggaaatggaacccatataaagtggtgaaatatacattgattt 139  Q
    ||||||||||||||||| |||||||||||| | ||||||||||||    
T  22786254 tttggaaatggaacccacataaagtggtgagacatacattgattt 22786210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 41508362 - 41508402
Alignment:
Q  105 gaacccatataaagtggtgaaatatacattgatttaatcca 145  Q
    ||||||||||||||| ||||||||||||||||||| |||||    
T  41508362 gaacccatataaagtagtgaaatatacattgatttcatcca 41508402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 145
Target Start/End: Original strand, 24539171 - 24539250
Alignment:
Q  66 attgggttaaataaatatgagttctacgttttggaaatggaacccatataaagtggtgaaatatacattgatttaatcca 145  Q
    |||||||||||| ||| || ||  ||| |||||||||||||| |||||||||||||||  | ||| |||||||| |||||    
T  24539171 attgggttaaatcaatgtgggtcatacattttggaaatggaatccatataaagtggtgggacatatattgattttatcca 24539250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 98 - 139
Target Start/End: Complemental strand, 46068038 - 46067997
Alignment:
Q  98 ggaaatggaacccatataaagtggtgaaatatacattgattt 139  Q
    |||||||||||||| ||||||||||| || ||||||||||||    
T  46068038 ggaaatggaacccacataaagtggtggaacatacattgattt 46067997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 139
Target Start/End: Original strand, 19840962 - 19841006
Alignment:
Q  95 tttggaaatggaacccatataaagtggtgaaatatacattgattt 139  Q
    ||||||||||||||||| |||||||||| | | ||||||||||||    
T  19840962 tttggaaatggaacccacataaagtggtaagacatacattgattt 19841006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 99 - 139
Target Start/End: Original strand, 26703521 - 26703561
Alignment:
Q  99 gaaatggaacccatataaagtggtgaaatatacattgattt 139  Q
    ||||||||||||| |||||||||||| | ||||||||||||    
T  26703521 gaaatggaacccacataaagtggtgagacatacattgattt 26703561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 45909559 - 45909515
Alignment:
Q  95 tttggaaatggaacccatataaagtggtgaaatatacattgattt 139  Q
    ||||||||||||||||| |||||||||||  | ||||||||||||    
T  45909559 tttggaaatggaacccacataaagtggtgggacatacattgattt 45909515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 139
Target Start/End: Complemental strand, 32401226 - 32401176
Alignment:
Q  89 ctacgttttggaaatggaacccatataaagtggtgaaatatacattgattt 139  Q
    |||||||||  |||||||||||| ||||||||||| |||||||||| ||||    
T  32401226 ctacgtttttaaaatggaacccacataaagtggtggaatatacattaattt 32401176  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 139
Target Start/End: Original strand, 42224668 - 42224712
Alignment:
Q  95 tttggaaatggaacccatataaagtggtgaaatatacattgattt 139  Q
    ||||||||||||||||| |||||||||||  | ||||||||||||    
T  42224668 tttggaaatggaacccacataaagtggtgggacatacattgattt 42224712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 145
Target Start/End: Original strand, 26886 - 26989
Alignment:
Q  40 cactttctctaacacccactttttatattgggttaaataaatatgagttctacgttttggaaatggaacccatataaagtggtgaaatatacattgattt 139  Q
    |||||||||||||| ||||| ||| |||||| |||||  | |||| || ||||| |||| |||| ||||||| | ||||||||| || ||||||||||||    
T  26886 cactttctctaacatccactcttt-tattggtttaaagcattatgggt-ctacgctttgaaaattgaacccacacaaagtggtggaacatacattgattt 26983  T
Q  140 aatcca 145  Q
    | ||||    
T  26984 attcca 26989  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 139
Target Start/End: Original strand, 25719161 - 25719234
Alignment:
Q  66 attgggttaaataaatatgagttctacgttttggaaatggaacccatataaagtggtgaaatatacattgattt 139  Q
    |||||||||||| | | || || |||| ||||||||||| |||||| |||||||||||  | ||||||||||||    
T  25719161 attgggttaaatcattgtgggtcctacattttggaaatgaaacccacataaagtggtgggacatacattgattt 25719234  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 40 - 145
Target Start/End: Original strand, 48339364 - 48339467
Alignment:
Q  40 cactttctctaacacccactttttatattgggttaaataaatatgagttctacgttttggaaatggaacccatataaagtggtgaaatatacattgattt 139  Q
    |||||||||||||| ||||| ||| |||||| |||||  | |||| || ||||| |||| |||| ||||||| | ||||||||| || ||||||||||||    
T  48339364 cactttctctaacatccactcttt-tattggtttaaagcattatgggt-ctacgctttgaaaattgaacccacacaaagtggtggaacatacattgattt 48339461  T
Q  140 aatcca 145  Q
    | ||||    
T  48339462 attcca 48339467  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 13070043 - 13069999
Alignment:
Q  95 tttggaaatggaacccatataaagtggtgaaatatacattgattt 139  Q
    |||| |||||||||||| ||||||||||| || ||||||||||||    
T  13070043 tttgaaaatggaacccacataaagtggtggaacatacattgattt 13069999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 16178686 - 16178642
Alignment:
Q  95 tttggaaatggaacccatataaagtggtgaaatatacattgattt 139  Q
    ||||||||||||||||| |||||||||||  | ||||||||||||    
T  16178686 tttggaaatggaacccacataaagtggtgggacatacattgattt 16178642  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 1205930 - 1205886
Alignment:
Q  95 tttggaaatggaacccatataaagtggtgaaatatacattgattt 139  Q
    ||||||||| |||||||||||||||||||| | ||||||| ||||    
T  1205930 tttggaaatagaacccatataaagtggtgagacatacattaattt 1205886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 139
Target Start/End: Complemental strand, 4595845 - 4595801
Alignment:
Q  95 tttggaaatggaacccatataaagtggtgaaatatacattgattt 139  Q
    |||| |||||||||||||| |||||||||| | ||||||||||||    
T  4595845 tttgaaaatggaacccataaaaagtggtgagacatacattgattt 4595801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 95 - 139
Target Start/End: Original strand, 19090292 - 19090336
Alignment:
Q  95 tttggaaatggaacccatataaagtggtgaaatatacattgattt 139  Q
    ||||||||||||||||| |||||||||||  | ||||||||||||    
T  19090292 tttggaaatggaacccacataaagtggtgggacatacattgattt 19090336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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