View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10114_high_1 (Length: 683)
Name: NF10114_high_1
Description: NF10114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10114_high_1 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 456; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 125 - 664
Target Start/End: Original strand, 45616170 - 45616709
Alignment:
| Q |
125 |
gttgattgacttgattttgtgacagtttctatcaaacaaacttagattaa-ttaattagatctttctttgctaccaaattaacagccacatacattccat |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45616170 |
gttgattgacttgattttgtgacagtttctatcaaacaaacttgaattaaattaattagatatttctttgctaccaaattaacagccacatacattccat |
45616269 |
T |
|
| Q |
224 |
agttgaacaaatgattggctttagcttatatatcatcaatcattgcacatgcatcaaatattcctttacccaccaacta--attaatttggatttctaag |
321 |
Q |
| |
|
|| | |||||||||||||||||||| | |||| || ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
45616270 |
agctaaacaaatgattggctttagcat-tataccaccaatcattgcacatgcatcaaatattcctttacccaccaactataattaatttggatttctaag |
45616368 |
T |
|
| Q |
322 |
aataaccgaacaagttatagactctgaatatacaacgtgattgatttataaccatgtgttttcatgttttaaaatgatgtaattttgtctctactcattg |
421 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
45616369 |
aataacagaacaagttatagactctgaatatacaacgtgattgatttataaccatgtgttttcatgttt-aaaatgatgtaattttgtctctactcattg |
45616467 |
T |
|
| Q |
422 |
gaacatggtggcaacaatgtgctatataagatgtttaattcagctcttgcttgttcattaaaaccactaattaacactgtcagtaccatgttgcaaatga |
521 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45616468 |
gaacatggtggcaacaatgtgttatataagatgtttaattcagctcttgcttgttcattaaa-ccactaattaacactgtcagtaccatgttgcaaatga |
45616566 |
T |
|
| Q |
522 |
gtttgcagtatttggctagcaaacgcatgagatttggctatgaaaagttaacaagtaaaaggatgatgagagtaggaaaacgttgcatttgggtgaagtc |
621 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45616567 |
gtttgcagtatttggctaccaaacgcatgagatttggctatgaaaagttaacaagtaaaaggatgatgagagtaggaaaacgttgcatttgggtgaagtc |
45616666 |
T |
|
| Q |
622 |
tttgaatggaaaactacgtggtctaaggttatcacgttctagg |
664 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45616667 |
tttgaatggaaaactacgtggtctaaggttatcacgttctagg |
45616709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 18 - 77
Target Start/End: Original strand, 45616062 - 45616122
Alignment:
| Q |
18 |
catcagtcaaaaataaaata-ttaaatcatagactaaacaataagagtaattagtaggcac |
77 |
Q |
| |
|
|||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
45616062 |
catcagtcaaaaataagatacttaaatcatagactaaacattaagagtaattagtaggcac |
45616122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University