View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10114_high_14 (Length: 238)
Name: NF10114_high_14
Description: NF10114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10114_high_14 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 16 - 238
Target Start/End: Complemental strand, 34383185 - 34382963
Alignment:
| Q |
16 |
gttagttcataaatagtacgtttcagtgcacatgggagccaagactaagccattttgtatttaaattaaaaacagacttactttcaattgttctgtctac |
115 |
Q |
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| T |
34383185 |
gttagttcataaatagtacgtttcagtgcacatgggagccaagactaagccattttgtatttaaattaaaaacagacttactttcaattgttctgtctac |
34383086 |
T |
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| Q |
116 |
aatttttcaaattgtcaactttctcacacatttagcatgccactgtaccaaaaatttaatatgatttacactagatctcctagcatattattaaaaaata |
215 |
Q |
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| T |
34383085 |
aatttttcaaattgtcaactttctcacacatttagcatgccactgtaccaaaaatttaatatgatttacactagatctcctagcatattattaaaaaata |
34382986 |
T |
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| Q |
216 |
atgagtttactgaaacattgttc |
238 |
Q |
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||||||||||||||||||||||| |
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| T |
34382985 |
atgagtttactgaaacattgttc |
34382963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 116 - 238
Target Start/End: Complemental strand, 34368464 - 34368341
Alignment:
| Q |
116 |
aatttttcaaattgtcaactttctcacacatttagcatgccactgtaccaaaaatttaatatgatttacactagatctcctagcatattattaa-aaaat |
214 |
Q |
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|||||| ||||||| ||| || |||||||||| ||| ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| ||||| |
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| T |
34368464 |
aattttgcaaattgccaaattgctcacacattgagcgtgccactgtaccaaaaaattaatatgatttacactagatgtcctagcatattattaaaaaaat |
34368365 |
T |
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| Q |
215 |
aatgagtttactgaaacattgttc |
238 |
Q |
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|||||||||||||||||| ||||| |
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| T |
34368364 |
aatgagtttactgaaacactgttc |
34368341 |
T |
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