View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10114_high_2 (Length: 571)
Name: NF10114_high_2
Description: NF10114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10114_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 513; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 19 - 555
Target Start/End: Complemental strand, 40533607 - 40533072
Alignment:
| Q |
19 |
acagaataaaagttacctacctagaacctgagaagctgtgatacgtttctttggatcttgcataagcatcctactaacaagatccttagcactgtttgat |
118 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40533607 |
acagactaaaagttacctacctagaacctgagaagctgtgatacgtttctttggatcttgcataagcatcctactaacaagatccttagcactgtttgat |
40533508 |
T |
|
| Q |
119 |
atacttggccatggacgactttcaaagtcaatatgaccttgcaatatggcatcaaatattcccttttccgtctctagaacaagtattttagggaaaagtc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
40533507 |
atacttggccatggacgactttcaaagtcaatatgaccttgcaatatggcatcaaatattcccttttccgtctctagaacaagtattttaggtaaaagtc |
40533408 |
T |
|
| Q |
219 |
agtcaagcctagacaaggtaattatcatttcataatgaaacgactaatgaaccagttgattttacctgcccaaaatggaggcacaccactaagtaagatg |
318 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
40533407 |
agtcaagcctagacaag-taattatcatttcataatgaaacgactaatgaaccagttgattttacctgcccaaaatggaggcacaccacaaagtaagatg |
40533309 |
T |
|
| Q |
319 |
tacaatataactcctgcactccatatatctgtttccttcccatatttacggcgtagaacttctggcgcaacataataagcactgccgactatatcccgat |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40533308 |
tacaatataactcctgcactccatatatctgtttccttcccatatttacggcgtagaacttctggcgcaacataataagcactgccgactatatcccgat |
40533209 |
T |
|
| Q |
419 |
atacctttcctgcgaataaataatcagaaaagtttaagtgtacatattctaaaaggaagacaatcctgctctttattatgataaatcctctgatcaaaag |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40533208 |
atacctttcctgcgaataaataatcagaaaagtttaagtgtacatattctaaaaggaagacaatcctgctctttattatgataaatcctctgatcaaaag |
40533109 |
T |
|
| Q |
519 |
acaagtagttgccaacatactacatatgtcatgtgtg |
555 |
Q |
| |
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||||||||||||||||||||||||||||| ||||||| |
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| T |
40533108 |
acaagtagttgccaacatactacatatgttatgtgtg |
40533072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 23 - 546
Target Start/End: Complemental strand, 40538055 - 40537530
Alignment:
| Q |
23 |
aataaaagttacctacctagaacctgagaagctgtgatacgtttctttggatcttgcataagcatcctactaacaagatccttagcactgtttgatatac |
122 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| | |||||||| |||||||||| ||||||||| |
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| T |
40538055 |
aataaaatttacctacctagaacctgagaagctgtgatacgtttgtttggatcttgtataagcatcttgctaacaaggtccttagcacagtttgatatga |
40537956 |
T |
|
| Q |
123 |
ttggccatggacgactttcaaagtcaatatgaccttgcaatatggcatcaaatattcccttttccgtctctagaacaagtattttagggaaaagtcagtc |
222 |
Q |
| |
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||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||| | || |
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| T |
40537955 |
ttggccatggaagactttcaaagtcaatacgaccttgcaatatggcatcaaatattcctttttccgtctctaaaacaagtattttagggaaaacta--tc |
40537858 |
T |
|
| Q |
223 |
aagcctag-acaaggtaattatcatttcataatgaaacgactaatgaaccagttgattttacctgcccaaaatggaggcacaccactaagtaagatgtac |
321 |
Q |
| |
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|||| ||| ||| ||||||||| ||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
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| T |
40537857 |
aagcttagtacacggtaattattattccataatgaatacaccgatgaaccagttgattttacctgcccaaaatggaggcacaccagaaagtaagacatac |
40537758 |
T |
|
| Q |
322 |
aatataactcctgcactccatatatctgtttccttcccatatttacggcgtagaacttctggcgcaacataataagcactgccgactatatcccgatata |
421 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||| |||||| |
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| T |
40537757 |
aatataactcctgcactccatatatctatttccttcccatatttacgacgtagaacttctggcgcaacataataagcacttccaactatatcctgatata |
40537658 |
T |
|
| Q |
422 |
cctttcctgcgaataaataatcagaaaagtttaagtgtacatattctaaaaggaagacaatcctgctctttattatgataaatcctctgatcaaaagaca |
521 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||| || |||||||||||||||||||||||| |
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| T |
40537657 |
cctttcctttgaataaataatcagaaaagtttaagtgtgtatattctaaaaggaagacaatccttctctttaatacgataaatcctctgatcaaaagaca |
40537558 |
T |
|
| Q |
522 |
agtagttgc---caacatactacatatg |
546 |
Q |
| |
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||||||||| |||||||||||||||| |
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| T |
40537557 |
agtagttgcacacaacatactacatatg |
40537530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 88; Significance: 5e-42; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 279 - 430
Target Start/End: Complemental strand, 20503068 - 20502917
Alignment:
| Q |
279 |
tttacctgcccaaaatggaggcacaccactaagtaagatgtacaatataactcctgcactccatatatctgtttccttcccatatttacggcgtagaact |
378 |
Q |
| |
|
|||||| |||||||||||||| ||||||||||||||||| || | ||||||||||||||||||||||||| |||| ||||| || |||| || |||||| |
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| T |
20503068 |
tttaccagcccaaaatggagggacaccactaagtaagatatatagtataactcctgcactccatatatctatttctttcccgcatctacgacgaagaact |
20502969 |
T |
|
| Q |
379 |
tctggcgcaacataataagcactgccgactatatcccgatatacctttcctg |
430 |
Q |
| |
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||||| ||||||||||||||||| ||||||||||| ||||| |||||||||| |
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|
| T |
20502968 |
tctggagcaacataataagcacttccgactatatcgcgatacacctttcctg |
20502917 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 37 - 194
Target Start/End: Complemental strand, 20503331 - 20503174
Alignment:
| Q |
37 |
acctagaacctgagaagctgtgatacgtttctttggatcttgcataagcatcctactaacaagatccttagcactgtttgatatacttggccatggacga |
136 |
Q |
| |
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|||||||||||| | ||| || || |||||||| || || || |||||||| ||| |||||||||||| || |||| ||| || | ||||| || | |
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| T |
20503331 |
acctagaacctgtgcagcggtaatgcgtttcttcggttcctgtataagcattttacgaacaagatccttggcgctgtctgaaattttaggccacggttca |
20503232 |
T |
|
| Q |
137 |
ctttcaaagtcaatatgaccttgcaatatggcatcaaatattcccttttccgtctcta |
194 |
Q |
| |
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|||||||| ||||||||||||| |||||| |||||||||||||||||||| ||||||| |
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| T |
20503231 |
ctttcaaaatcaatatgaccttccaatattgcatcaaatattcccttttcagtctcta |
20503174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 272 - 430
Target Start/End: Complemental strand, 55169231 - 55169073
Alignment:
| Q |
272 |
agttgattttacctgcccaaaatggaggcacaccactaagtaagatgtacaatataactcctgcactccatatatctgtttccttcccatatttacggcg |
371 |
Q |
| |
|
||||||| ||||| |||||||| || || ||||||||||| | || |||||||| | ||||||||||| || ||| ||||||| ||||| ||||| || |
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| T |
55169231 |
agttgatcttaccagcccaaaaaggtggtacaccactaagcagaatatacaatatgatccctgcactccaaatgtctatttcctttccataattacgacg |
55169132 |
T |
|
| Q |
372 |
tagaacttctggcgcaacataataagcactgccgactatatcccgatatacctttcctg |
430 |
Q |
| |
|
|| || || || |||||||| ||||||||||| || ||||| || || || ||||||| |
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|
| T |
55169131 |
aagtacctcaggagcaacatagtaagcactgcctaccatatcacggtaaacttttcctg |
55169073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 281 - 341
Target Start/End: Complemental strand, 39941894 - 39941834
Alignment:
| Q |
281 |
tacctgcccaaaatggaggcacaccactaagtaagatgtacaatataactcctgcactcca |
341 |
Q |
| |
|
|||||||||||||||| ||||| ||||| | |||||||||||| |||||||| |||||||| |
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|
| T |
39941894 |
tacctgcccaaaatggtggcaccccacttaataagatgtacaaaataactccagcactcca |
39941834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 282 - 341
Target Start/End: Original strand, 36383005 - 36383064
Alignment:
| Q |
282 |
acctgcccaaaatggaggcacaccactaagtaagatgtacaatataactcctgcactcca |
341 |
Q |
| |
|
|||||||||||||||||| ||||| | |||||||||||| | |||||||| |||||||| |
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|
| T |
36383005 |
acctgcccaaaatggaggaacaccgcaaagtaagatgtatagaataactccagcactcca |
36383064 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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