View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10114_high_3 (Length: 456)
Name: NF10114_high_3
Description: NF10114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10114_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 439
Target Start/End: Original strand, 1911711 - 1912152
Alignment:
| Q |
1 |
aagtgtgtttaaggactggtggtggaaggtggtggggtgaggaatgggaaaatggttgaaaatttggggatggagggaatgtttgggaatggaggacagt |
100 |
Q |
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| T |
1911711 |
aagtgtgtttaaggactggtggtggaaggtggtggggtgaggaatgggaaaatggttgaaaatttggggatggagggaatgtttgggaatggaggacaat |
1911810 |
T |
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| Q |
101 |
ctggcttaggcagtggtggaaatgaaaatgaaggcaatggtggaaagcctgggaaatttgttaaagcttgttcagtagtacttgcttgcaaaagatttct |
200 |
Q |
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| T |
1911811 |
ctggcttaggcagtggtggaaatgaaaatgaaggcaatggtggaaagcctgggaaatttgttaaagcttgttcagtagtacttgcttgcaaaagatttct |
1911910 |
T |
|
| Q |
201 |
agctgctaggctcaagctcatgtttgagaagcttaaagcaaaaaagaaaattatgatgaaggatttctttgaggccatggttaagaatgaagaggaatgt |
300 |
Q |
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| T |
1911911 |
agctgctaggctcaagctcatgtttgagaagcttaaagcaaaaaagaaaattatgatgaaggatttctttgaggccatggttaagaatgaagaggaatgt |
1912010 |
T |
|
| Q |
301 |
tgcaaaatatgcaaatgggagatatggtttgaaattgtatgtgaggctaaaggggaatgtttggtaaatatatatagagttagagtgaaactaatttagt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1912011 |
tgcaaaatatgcaaatgggagatatggtttgaaattgtatgtgaggctaaaggggaatgtttggtaaatatatatagagttagagtgaaactaatttagt |
1912110 |
T |
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| Q |
401 |
gaac---nnnnnnngtcttagcaatttttgttagctcacctt |
439 |
Q |
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|||| |||||||||||||||||||||||||||| |
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| T |
1912111 |
gaacaaaaaaaaaagtcttagcaatttttgttagctcacctt |
1912152 |
T |
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