View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10114_high_7 (Length: 377)
Name: NF10114_high_7
Description: NF10114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10114_high_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 336; Significance: 0; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 19 - 362
Target Start/End: Complemental strand, 38313020 - 38312677
Alignment:
| Q |
19 |
cttgcagctattatattttctggctacattgtctatgacacagacaaccttatcaagaggtactcctatgatgagtatatctgggcttctgtctccttat |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38313020 |
cttgcagctattatattttctggctacattgtctatgacacagacaaccttatcaagaggtactcctatgatgagtatatctgggcttctgtctccttat |
38312921 |
T |
|
| Q |
119 |
atctagatgtcataaacctcttcctctctctacttactgtttttagagctgctaattgaagatgatataggaaattctatttgatgtaaatttctgttag |
218 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38312920 |
atctagatgtcatcaacctcttcctctctctacttactgtttttagagctgctaattgaagatgatataggaaattctatttgatgtaaatttctgttag |
38312821 |
T |
|
| Q |
219 |
atgctaaatgaccttgtccaactgtggaatctaatgtcttttaacggtttcttgaatatctcattaggattttaaggttaggtttgaatcatggttttta |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38312820 |
atgctaaatgaccttgtccaactgtggaatctaatgtcttttaacggtttcttgaatatctcattaggattttaaggttaggtttgaatcatggttttta |
38312721 |
T |
|
| Q |
319 |
tgtttctatagcctcaaggagagggataaactatctgtaatatc |
362 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
38312720 |
tgtttctatagcctcaaggagagagataaactatctgtaatatc |
38312677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 141
Target Start/End: Complemental strand, 38280148 - 38280024
Alignment:
| Q |
19 |
cttgcagctattatattttctggctacattgt--ctatgacacagacaaccttatcaagaggtactcctatgatgagtatatctgggcttctgtctcctt |
116 |
Q |
| |
|
|||| ||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||| ||| |||||| | || || | |||||| || ||||| |
|
|
| T |
38280148 |
cttggagctattatattttctggctacattgtgtctatgacacatacaaccttatcgagaggttctcatatgatcaatacattttggcttcggtttcctt |
38280049 |
T |
|
| Q |
117 |
atatctagatgtcataaacctcttc |
141 |
Q |
| |
|
||||| || |||| ||||||||| |
|
|
| T |
38280048 |
gtatctggacatcatcaacctcttc |
38280024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 38271471 - 38271395
Alignment:
| Q |
19 |
cttgcagctattatattttctggctacattgtctatgacacagacaaccttatcaagaggtactcctatgatgagta |
95 |
Q |
| |
|
|||| |||||||||||||| |||||||||| || |||||| |||||||||| |||||||| ||| |||||||||| |
|
|
| T |
38271471 |
cttggagctattatattttatggctacattttcattgacacggacaaccttaacaagaggttctcaaatgatgagta |
38271395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 38275222 - 38275146
Alignment:
| Q |
19 |
cttgcagctattatattttctggctacattgtctatgacacagacaaccttatcaagaggtactcctatgatgagta |
95 |
Q |
| |
|
|||| |||||||||||||| |||| ||||| || ||||||||||||||||| ||||| || ||| |||||||||| |
|
|
| T |
38275222 |
cttgtagctattatattttatggccacattttcgttgacacagacaaccttaacaagaagttctcaaatgatgagta |
38275146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 52 - 91
Target Start/End: Original strand, 45584727 - 45584766
Alignment:
| Q |
52 |
tatgacacagacaaccttatcaagaggtactcctatgatg |
91 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||| |
|
|
| T |
45584727 |
tatgacacaaacaaccttatcaagaggttctcctatgatg |
45584766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 22 - 171
Target Start/End: Original strand, 31701278 - 31701427
Alignment:
| Q |
22 |
gcagctattatattttctggctacattgtctatgacacagacaaccttatcaagaggtactcctatgatgagtatatctgggcttctgtctccttatatc |
121 |
Q |
| |
|
||||| |||||||||| ||||||||| | ||||| ||||||||| | |||||||| ||||| |||||||| | || ||||||||||||||||||||| |
|
|
| T |
31701278 |
gcagcaattatattttgtggctacatcctatatgatacagacaacttgatcaagagatactcttatgatgaattcatttgggcttctgtctccttatatt |
31701377 |
T |
|
| Q |
122 |
tagatgtcataaacctcttcctctctctacttactgtttttagagctgct |
171 |
Q |
| |
|
| || |||| ||||| ||||| ||| | || ||| |||| ||||||||| |
|
|
| T |
31701378 |
tggacatcatcaaccttttcctgtctttgctcactattttcagagctgct |
31701427 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University