View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10114_high_9 (Length: 344)
Name: NF10114_high_9
Description: NF10114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10114_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 24 - 333
Target Start/End: Original strand, 33582716 - 33583027
Alignment:
| Q |
24 |
tccatgatcaactatattttaattttctatctatatcaatctactgaccactcttaacttgagtgaagatcgcactggattcttctgatagcagttcttg |
123 |
Q |
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| T |
33582716 |
tccatgatcaactatattttaattttttatctatatcaatctactgaccactcttaacttgagtgaagatcgcactggattcttctgatagcagttcttg |
33582815 |
T |
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| Q |
124 |
cttcggtgcctccttatactttgaaaaagaatacggtaacttagcatttgaatatattctaactgaaattaaatggtttaattcgagtgattaatgatga |
223 |
Q |
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| T |
33582816 |
cttccgtgcctccttatactttgaaaaagaatacagtaacttagcatttgaatatattctaactgaaattaaatggttcaatttgagtgattaatgatga |
33582915 |
T |
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| Q |
224 |
ggttcaggaaaggtcaagtcaattagaagt--taagtacgaatcctgattgaaacaatcattaactaaactttacttacttcctgtctaaactacggatc |
321 |
Q |
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| T |
33582916 |
ggttcgggaaaggtcaagtcaattggaagtaccaagtacaaatcctggttgaaataattattgactaaattttacttacctcctgtctgaactacgaatc |
33583015 |
T |
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| Q |
322 |
ataagagttcat |
333 |
Q |
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|||| ||||||| |
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| T |
33583016 |
ataaaagttcat |
33583027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 19 - 134
Target Start/End: Original strand, 33593728 - 33593842
Alignment:
| Q |
19 |
tatattccatgatcaactatattttaattttctatctatatcaatctactgaccactcttaacttgagtgaagatcgcactggattcttctgatagcagt |
118 |
Q |
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| T |
33593728 |
tatattccatgatcaactataatttaattttttatctatatcaatctactgaccactcttaacttgagtgaagatcgcgctggatt-ttctgatagcagt |
33593826 |
T |
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| Q |
119 |
tcttgcttcggtgcct |
134 |
Q |
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| T |
33593827 |
tcttgcttcggtgcct |
33593842 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 138 - 201
Target Start/End: Complemental strand, 37230611 - 37230548
Alignment:
| Q |
138 |
tatactttgaaaaagaatacggtaacttagcatttgaatatattctaactgaaattaaatggtt |
201 |
Q |
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| T |
37230611 |
tatactttgaaaaataatagagtaacttagcatttaaatatactctaactgaaattaaatggtt |
37230548 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 333
Target Start/End: Original strand, 33596090 - 33596258
Alignment:
| Q |
164 |
ttagcatttgaatatattctaactgaaattaaatggtttaattcgagtgattaatgatgaggttcaggaaaggtcaagtcaattagaagt--taagtacg |
261 |
Q |
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| T |
33596090 |
ttagcatttgaatatactctaactgaaattaaatggttctattcaagtgatta---atgaggttcggtgaaggtcaagtcgattgcaagtaccaagttcg |
33596186 |
T |
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| Q |
262 |
aatcctgattgaaacaatcattaactaaactttacttacttcctgtctaaactacggatcataagagttcat |
333 |
Q |
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| T |
33596187 |
aaccctggttgtaacaatcattgactagattttacttacctcccgtccgaactatggattatcatagttcat |
33596258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 138 - 201
Target Start/End: Complemental strand, 37237528 - 37237465
Alignment:
| Q |
138 |
tatactttgaaaaagaatacggtaacttagcatttgaatatattctaactgaaattaaatggtt |
201 |
Q |
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|||||||||||||| |||| |||||||||||||| |||||| |||||||||||||||| |||| |
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| T |
37237528 |
tatactttgaaaaataatagagtaacttagcatttaaatatactctaactgaaattaaagggtt |
37237465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 37197551 - 37197456
Alignment:
| Q |
26 |
catgatcaactatattttaattttctatctatatcaatctactgaccactcttaacttgagtgaagatcgcactggattcttctgatagcagttcttgct |
125 |
Q |
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| T |
37197551 |
catgatcaactatattttaattttctatct------atctatttaccattcttaacttgaccgaagatcgcgctggattcttccgaaagaaattcttgct |
37197458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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