View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10114_low_1 (Length: 701)

Name: NF10114_low_1
Description: NF10114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10114_low_1
NF10114_low_1
[»] chr7 (9 HSPs)
chr7 (148-685)||(35799784-35800320)
chr7 (1-113)||(35800354-35800466)
chr7 (357-488)||(35786726-35786858)
chr7 (358-488)||(35761798-35761929)
chr7 (567-638)||(35786563-35786635)
chr7 (572-643)||(35789987-35790061)
chr7 (593-657)||(35756262-35756326)
chr7 (567-638)||(35761635-35761707)
chr7 (73-113)||(35790180-35790220)


Alignment Details
Target: chr7 (Bit Score: 504; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 148 - 685
Target Start/End: Complemental strand, 35800320 - 35799784
Alignment:
Q  148 gatgcatagtagaaaaagtgggtgaatgttagaaattagaattgataaatatatcatgatattgtgaatagttgctgtcacatgcaggttgatgcagcac 247  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35800320 gatgcatagtagaaaaagtgggtgaatgttagaaattagaattgataaatatatcatgatattgtgaatagttgctgtcacatgcaggttgatgcagcac 35800221  T
Q  248 aattgtgttgtggagacatcaaaaccaaaccttgattgtgaccactttacttttgaattggttcaattggggnnnnnnnggttttaacaattggggtttt 347  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||    
T  35800220 aattgtgttgtggagacatcaaaaccaaaccttgattgtgaccactttacttttgaattggttcaattggggtttttt-ggttttaacaattggggtttt 35800122  T
Q  348 tcaattaaagttgatagataactatgtttctgtttgtgttggatattctgctgattatgttctgtaataatttttgtctgtgttgtgctttgaattcatg 447  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35800121 tcaattaaagttgatagataactatgtttctgtttgtgttggatattctgctgattatgttctgtaataatttttgtctgtgttgtgctttgaattcatg 35800022  T
Q  448 cgggctatggtttgctatttcgaattgaatatctagaaatcatctcttggtgaaacgttgttaagaaaaccctatgccattaaattgcttattcttgtat 547  Q
    ||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35800021 cggtctacggtttgctatttcgaattgaatatctagaaatcatctcttggtgaaacgttgttaagaaaaccctatgccattaaattgcttattcttgtat 35799922  T
Q  548 gcagctaaattgtgtatctttttgtacatgaatctgttttgattatggttatatttgatctgaaaatgtcttgattttggccatgttcaaggagatgttt 647  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35799921 gcagctaaattgtgtatctttttgtacatgaatctgttttgattatggttatatttgatctgaaaatgtcttgattttggccatgttcaaggagatgttt 35799822  T
Q  648 attggttagacttaaaatcgcctgatgatgatgtttgt 685  Q
    ||||||||||||||||||||||||||||||||||||||    
T  35799821 attggttagacttaaaatcgcctgatgatgatgtttgt 35799784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 35800466 - 35800354
Alignment:
Q  1 accatcatcaagtgggtcagtggagatcctcctcttcatcctataacggaaaaccacctttaggttcgttcgttcttcagtttttgcatggattgatctt 100  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35800466 accatcatcaagtgggtctgtggagatcctcctcttcatcctataacggaaaaccacctttaggttcgttcgttcttcagtttttgcatggattgatctt 35800367  T
Q  101 tgatgtgaaactg 113  Q
    |||||||||||||    
T  35800366 tgatgtgaaactg 35800354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 357 - 488
Target Start/End: Complemental strand, 35786858 - 35786726
Alignment:
Q  357 gttgatagataactatgtttctgtttgtgttggatattctgctgattatgttctgtaataatttttgtctgtgttgtgctttgaattcatgcgggcta-t 455  Q
    ||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||| | ||||||||||| |||||||||| | ||||  | ||| |    
T  35786858 gttgatagataactatgtttctgtttgtgttggatcttctgccaattatgttctgtaatcacttttgtctgtgctgtgctttgattacatgtcgtctatt 35786759  T
Q  456 ggtttgctatttcgaattgaatatctagaaatc 488  Q
    | | ||||||||| |||||||||||||| ||||    
T  35786758 gatatgctatttctaattgaatatctagtaatc 35786726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 358 - 488
Target Start/End: Complemental strand, 35761929 - 35761798
Alignment:
Q  358 ttgatagataactatgtttctgtttgtgttggatattctgctgattatgttctgtaataatttttgtctgtgttgtgctttgaattcatgcgggctatgg 457  Q
    |||||||||||||||||||||||||||||||||| || ||| |||||||||||||| | | |||||| |||| |||||||||| |||||   | |||| |    
T  35761929 ttgatagataactatgtttctgtttgtgttggatcttatgcagattatgttctgtattcacttttgtttgtgctgtgctttgatttcattttgtctatag 35761830  T
Q  458 tt-tgctatttcgaattgaatatctagaaatc 488  Q
    || || |||||| |||||||||||||| ||||    
T  35761829 ttatgttatttctaattgaatatctagtaatc 35761798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 567 - 638
Target Start/End: Complemental strand, 35786635 - 35786563
Alignment:
Q  567 ttttgtacatgaatctgttttgattatggttatatttgatctgaaaat-gtcttgattttggccatgttcaag 638  Q
    ||||||||||||| || |||||||| | |||  ||||||||||||||| |||||||||||||| |||||||||    
T  35786635 ttttgtacatgaaactattttgatttttgtttaatttgatctgaaaatggtcttgattttggcaatgttcaag 35786563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 572 - 643
Target Start/End: Complemental strand, 35790061 - 35789987
Alignment:
Q  572 tacatgaatctgttttgattatggt--tatattt-gatctgaaaatgtcttgattttggccatgttcaaggagat 643  Q
    |||||||| ||||||||||||||||  ||||||| ||||| | ||||||||||||||||| ||||||||| ||||    
T  35790061 tacatgaaactgttttgattatggtgttatattttgatcttataatgtcttgattttggctatgttcaagtagat 35789987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 593 - 657
Target Start/End: Complemental strand, 35756326 - 35756262
Alignment:
Q  593 tggttatatttgatctgaaaatgtcttgattttggccatgttcaaggagatgtttattggttaga 657  Q
    |||||| |||||||| |||||| | ||||||||||| ||||||||| || | | |||||||||||    
T  35756326 tggttacatttgatcagaaaatatattgattttggcgatgttcaagtaggtatctattggttaga 35756262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 567 - 638
Target Start/End: Complemental strand, 35761707 - 35761635
Alignment:
Q  567 ttttgtacatgaatctgttttgattatggttatatttgatctgaaaatg-tcttgattttggccatgttcaag 638  Q
    ||||||||||||| |  |||| | | |||||| ||||||| |||||||| ||||||||||||| |||||||||    
T  35761707 ttttgtacatgaaaccattttaagtttggttaaatttgatatgaaaatggtcttgattttggcaatgttcaag 35761635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 73 - 113
Target Start/End: Complemental strand, 35790220 - 35790180
Alignment:
Q  73 ttcttcagtttttgcatggattgatctttgatgtgaaactg 113  Q
    ||||||||||||||||||||||  |||||||||| ||||||    
T  35790220 ttcttcagtttttgcatggattactctttgatgtcaaactg 35790180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University