View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10114_low_10 (Length: 425)
Name: NF10114_low_10
Description: NF10114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10114_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 386; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 419
Target Start/End: Complemental strand, 40849650 - 40849232
Alignment:
| Q |
1 |
atctgaaaagccacggacctcttgctttcctcaaggtttgtgttgaaggatgtattctttagtgtattagacgattgatctatatagcactgacacttca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40849650 |
atctgaaaagccacggacctcttgctttcctcaaggtttgtgttgaaggatgtattctttagtgtattagacgattgatctatatagcactgacacttca |
40849551 |
T |
|
| Q |
101 |
aactaaatgtgtgtttggttttcaatgcatgattcgacatcgagacaagcatttgcattcgaccatttttattttctcaaattgttactgatgtttacat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
40849550 |
aactaaatgtgtgtttggttttcaatgcatgattcgacatcgagacaagcatttgcattcgatcatttttattttctcaaattgttactgatgtttacat |
40849451 |
T |
|
| Q |
201 |
gtctcactattgatgttgtatcggtgctctgtagttattgattcgcctgtgtctaacttccttannnnnnnaacaataggtgaaagaggctggtcacatg |
300 |
Q |
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| T |
40849450 |
gtctcactattgatattgtatcggtgctctgtagttattgattcgcctgtgtttaacttccttatttttttaacaataggtgaaagaggctggtcacatg |
40849351 |
T |
|
| Q |
301 |
gttcctatggatcaaccaaaagctgcacttcagatgttaaaagattggatgcaagggaaactgataaggacaaagggaggagataatgtctcgtctatat |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40849350 |
gttcctatggatcaaccaaaagctgcacttcagatgttaaaagattggatgcaagggaaactgataaggacaaagggaggagataatgtctcgtctatat |
40849251 |
T |
|
| Q |
401 |
aatgcactcatcttaaaac |
419 |
Q |
| |
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| T |
40849250 |
aatgcactcatcttaaaac |
40849232 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 272 - 363
Target Start/End: Complemental strand, 40843522 - 40843431
Alignment:
| Q |
272 |
aacaataggtgaaagaggctggtcacatggttcctatggatcaaccaaaagctgcacttcagatgttaaaagattggatgcaagggaaactg |
363 |
Q |
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| T |
40843522 |
aacaataggtgaaagaggctggtcacatggttcctatggatcaaccaaaagttgcacttcagatgttacaagattggatgcaagggaaactg |
40843431 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 272 - 366
Target Start/End: Complemental strand, 40838808 - 40838714
Alignment:
| Q |
272 |
aacaataggtgaaagaggctggtcacatggttcctatggatcaaccaaaagctgcacttcagatgttaaaagattggatgcaagggaaactgata |
366 |
Q |
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| T |
40838808 |
aacaatagttgaaagaggctggtcacatggttcctatggatcaaccaaaagttgcacttcagatgttacaagaatggatgcaagggaaactgata |
40838714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 2 - 119
Target Start/End: Complemental strand, 40843709 - 40843592
Alignment:
| Q |
2 |
tctgaaaagccacggacctcttgctttcctcaaggtttgtgttgaaggatgtattctttagtgtattagacgattgatctatatagcactgacacttcaa |
101 |
Q |
| |
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|||||||||||| |||||| | |||||||| |||||||||||| |||||||||||| | || || || | ||||||||| |||| || |||||||||| |
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| T |
40843709 |
tctgaaaagccatggacctttggctttccttaaggtttgtgtttaaggatgtattcatgagcataagagtctattgatctacatagtacagacacttcaa |
40843610 |
T |
|
| Q |
102 |
actaaatgtgtgtttggt |
119 |
Q |
| |
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| |||| |||||| |||| |
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| T |
40843609 |
attaaaagtgtgtctggt |
40843592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 298 - 338
Target Start/End: Original strand, 21146898 - 21146938
Alignment:
| Q |
298 |
atggttcctatggatcaaccaaaagctgcacttcagatgtt |
338 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||| |
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| T |
21146898 |
atggtccctatggatcaaccaaaagctgcacttcagatgtt |
21146938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 274 - 338
Target Start/End: Original strand, 21151475 - 21151539
Alignment:
| Q |
274 |
caataggtgaaagaggctggtcacatggttcctatggatcaaccaaaagctgcacttcagatgtt |
338 |
Q |
| |
|
||||||||||| || ||||| || ||||| |||||||||||||||||||||||| | |||||||| |
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| T |
21151475 |
caataggtgaatgatgctggacatatggtccctatggatcaaccaaaagctgcattacagatgtt |
21151539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 338
Target Start/End: Original strand, 21126805 - 21126844
Alignment:
| Q |
299 |
tggttcctatggatcaaccaaaagctgcacttcagatgtt |
338 |
Q |
| |
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|||| ||||||||||||||||||||||||||||||||||| |
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| T |
21126805 |
tggtccctatggatcaaccaaaagctgcacttcagatgtt |
21126844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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