View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10114_low_11 (Length: 414)
Name: NF10114_low_11
Description: NF10114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10114_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 18 - 400
Target Start/End: Complemental strand, 31784556 - 31784173
Alignment:
| Q |
18 |
gcatcaaactattttggcaacctgagaaagaaaaaacaaatattgcattgtttacactaacttctcgtccatgcgagtctgtgatttttcctgtcttgat |
117 |
Q |
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| T |
31784556 |
gcatcaaactattttggtaacctgagaaagaaaaaacaaatattgcattgtttgcactaacttctcgtccatgcgagtctgtgatttttcctgtcttgat |
31784457 |
T |
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| Q |
118 |
ggcttgagacagactgctttgagctactatatctgctttatcaacattttcaatgaaa-ccacagacaatggtttcttgtagcacttatctacgagaaaa |
216 |
Q |
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||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||||||||| |
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| T |
31784456 |
ggcttgagacaaactgctttgagctactatatccgctttatcaacattttcaatgaaaaccacagacaatggtttcttgcagcactcatctacgagaaaa |
31784357 |
T |
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| Q |
217 |
tcaaggtgagacttccctctgaatttcacattgcatccattcatttctttggaactcagatccacaaaagtaaagttttcccggcttctatacagtaatt |
316 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
31784356 |
tcaaggtgagacttccctctgaatttcacattacatccattcatttctttggaactcagatccacaaaagtaaagttttcccggcttccatacagtaatt |
31784257 |
T |
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| Q |
317 |
cagcaagagaaacagcaattttctttttaccatgcctatcgggtccaacaaaattcacccacttgtccccacgctgatttaacc |
400 |
Q |
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| T |
31784256 |
cagctagagaaacagcaattttctttttaccatgcctatcgggtccaacaaaattcatccacttgtccccacgttgatttaacc |
31784173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 88 - 400
Target Start/End: Original strand, 19633725 - 19634038
Alignment:
| Q |
88 |
atgcgagtctgtgatttttcctgtcttgatggcttgagacagactgctttgagctactatatctgctttatcaacattttcaatgaaa-ccacagacaat |
186 |
Q |
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| T |
19633725 |
atgcgagtctgtgatttttcctgtcttgatggcttgagacaaactgctttgagctactatatcagctttatcaacattttcaatgaaaaccacagacaat |
19633824 |
T |
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| Q |
187 |
ggtttcttgtagcacttatctacgagaaaatcaaggtgagacttccctctgaatttcacattgcatccattcatttctttggaactcagatccacaaaag |
286 |
Q |
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| T |
19633825 |
ggtttcttgcagcactcatctacgagaaaatcaaggtgagacttccctctgaatttcacattgcatccattcatttctttggaactcagatccacaaaag |
19633924 |
T |
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| Q |
287 |
taaagttttcccggcttctatacagtaattcagcaagagaaacagcaattttctttttaccatgcctatcgggtccaacaaaattcacccacttgtcccc |
386 |
Q |
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| T |
19633925 |
taaagttttcccggcttccatacagtaattcagcaagagaaacaacaattttctttttaccatgcctatcgggtccaacaaaattcatccacttgtcccc |
19634024 |
T |
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| Q |
387 |
acgctgatttaacc |
400 |
Q |
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|||||||||||||| |
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| T |
19634025 |
acgctgatttaacc |
19634038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 19631819 - 19631893
Alignment:
| Q |
18 |
gcatcaaactattttggcaacctgagaaagaaaaaacaaatattgcattgtttacactaacttctcgtccatgcg |
92 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
19631819 |
gcatcaaactattttggcaacctgagaaagaaaaaacaaatagtacattgtttacactaacttctcgtccatgcg |
19631893 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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