View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10114_low_12 (Length: 391)
Name: NF10114_low_12
Description: NF10114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10114_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 13 - 373
Target Start/End: Complemental strand, 53476545 - 53476185
Alignment:
| Q |
13 |
aggagcacagagtgatataaaatggggggtactaagaatagaaaagaatccagcctatccaaaatcttgagagggacatgccaccgaaatggcccacttt |
112 |
Q |
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| T |
53476545 |
aggagtacagagtgatataaaatggggggtactaagaatagaaaagaatccagcctatccaaaatcttgagagggacatgccaccgaaatggcccacttt |
53476446 |
T |
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| Q |
113 |
gttgaggtatgatgggccacgtgtatagcgcaaaacgtagttgataggattgattgataggactatagtactagttaggcttttagagagaaaatggtat |
212 |
Q |
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| T |
53476445 |
gttgaggtatgatgggccacgtgtatagcgcaaaacgtagttgataggattgattgataggactatagtactagttaggcttttagagagaaaatggtat |
53476346 |
T |
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| Q |
213 |
ttaggtgacacttgtccttcgtttgagaagtttgattctccacgacaactaaacactgaaagtgacttcaacattaggcatgtgtgtgtagctcgtgaat |
312 |
Q |
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| T |
53476345 |
ttaggtgacacttgtccttcgtttgagaagtttgattctccacgacaactaaacactgaaagtgacttcaacattaggcatgtgtgtgtagctcgtgaat |
53476246 |
T |
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| Q |
313 |
gcttgccatctatagatattattatctaatctatctaattaagcagatgagaatatatagt |
373 |
Q |
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| T |
53476245 |
gcttgccatctatagatattattatctaatctatctaattaagcagatgagaatatatagt |
53476185 |
T |
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