View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10114_low_15 (Length: 349)
Name: NF10114_low_15
Description: NF10114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10114_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 1 - 334
Target Start/End: Original strand, 22046724 - 22047058
Alignment:
| Q |
1 |
ccatgctttctggtccatacatttccatagaatcatatttagaagttctaatatagtttgcaaattccttcttcaatgtctgcaaatagaagcataaacg |
100 |
Q |
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|||||| |||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22046724 |
ccatgccttctggtccatacatttccacataatcatatttagaagttctaatatagtttgcaaattccttcttcaatgtctgcaaatagaagcataaacg |
22046823 |
T |
|
| Q |
101 |
aaaaataaaatgaagaattgtgaatgtaaaattaccagtttgagatataaaaactaactaaccaatctatacttctcagaataatactttgtaagtttca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
22046824 |
aaaaataaaatgaagaattgtgaatgtaaaattaccagtttgagatataaaaactaactaaccaatttatacttctcagcataatactttgtaagtttca |
22046923 |
T |
|
| Q |
201 |
cttcaaaaggttttggttcaagtccaatat-ttgatatgtatgataatatggtaacttcaatgggctgaattcatctggctggacatcaagggcaaaatg |
299 |
Q |
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|||||||||||| | ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||| | |
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| T |
22046924 |
cttcaaaaggttctagttcaagtccaatatatcgatatgtatgataatatggtaacttcaatgggctgaattcatctagctggacatcaaggccaaaacg |
22047023 |
T |
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| Q |
300 |
attgtcaccaaggtatgtcattaaaagaagtttgt |
334 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
22047024 |
attgtcaccaaggtatgtcattaaaagaagtttgt |
22047058 |
T |
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