View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10114_low_17 (Length: 291)

Name: NF10114_low_17
Description: NF10114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10114_low_17
NF10114_low_17
[»] chr8 (3 HSPs)
chr8 (18-278)||(28439736-28440007)
chr8 (241-277)||(11771718-11771754)
chr8 (236-276)||(40512645-40512685)
[»] chr1 (2 HSPs)
chr1 (229-274)||(30433525-30433570)
chr1 (236-274)||(31060224-31060262)
[»] chr6 (2 HSPs)
chr6 (225-269)||(4250562-4250606)
chr6 (236-276)||(14552343-14552383)
[»] chr5 (1 HSPs)
chr5 (230-277)||(32460011-32460058)
[»] chr4 (1 HSPs)
chr4 (236-269)||(23928467-23928500)
[»] chr2 (1 HSPs)
chr2 (236-277)||(26427804-26427845)
[»] scaffold0045 (1 HSPs)
scaffold0045 (224-276)||(42212-42264)


Alignment Details
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 18 - 278
Target Start/End: Original strand, 28439736 - 28440007
Alignment:
Q  18 atatttcttgccaatgtacttgactaatagaggccacacataataactcttcacaaatacatttactaatgatcaaatccattaaggaacaattttaacc 117  Q
    ||||||||||||||||| |||||||||| ||||||||||||||||||||||||| | |||||||||||||||||||||| |||| |||||||||||||||    
T  28439736 atatttcttgccaatgtgcttgactaattgaggccacacataataactcttcacgattacatttactaatgatcaaatctattacggaacaattttaacc 28439835  T
Q  118 ctcaccaacaaaacaatctc--gtgtctaacctagttctgaacaagctttctgtatataattctacnnnnnnnnnaattgtatagcatagtata------ 209  Q
    |||||||||||| | |||||  ||||||||||||||| |||||| | |||||||||||||||||||         | |||||||||||| ||||          
T  28439836 ctcaccaacaaagcgatctcttgtgtctaacctagttttgaacatgttttctgtatataattctactttttttttatttgtatagcataatataagtata 28439935  T
Q  210 ---agtaaatataatacgtcatcgtaaatttaattcagttgatagagataatacataatatatacaaggtct 278  Q
       |||| ||||||||||||||||| | |||||||||||||||| ||||||| ||||||||||  |||||||    
T  28439936 tatagtatatataatacgtcatcgtgagtttaattcagttgataaagataatgcataatatatgtaaggtct 28440007  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 241 - 277
Target Start/End: Original strand, 11771718 - 11771754
Alignment:
Q  241 tcagttgatagagataatacataatatatacaaggtc 277  Q
    |||||||||||||| |||||||||||||| |||||||    
T  11771718 tcagttgatagagacaatacataatatatgcaaggtc 11771754  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 236 - 276
Target Start/End: Complemental strand, 40512685 - 40512645
Alignment:
Q  236 ttaattcagttgatagagataatacataatatatacaaggt 276  Q
    |||| ||||||| |||||| |||||||||||||||||||||    
T  40512685 ttaactcagttggtagagacaatacataatatatacaaggt 40512645  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 229 - 274
Target Start/End: Complemental strand, 30433570 - 30433525
Alignment:
Q  229 cgtaaatttaattcagttgatagagataatacataatatatacaag 274  Q
    ||||| ||||| ||||||||||||||||||||||||||||||||||    
T  30433570 cgtaagtttaactcagttgatagagataatacataatatatacaag 30433525  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 274
Target Start/End: Complemental strand, 31060262 - 31060224
Alignment:
Q  236 ttaattcagttgatagagataatacataatatatacaag 274  Q
    ||||||||||||||||||||||| |||||||||| ||||    
T  31060262 ttaattcagttgatagagataatgcataatatatgcaag 31060224  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 225 - 269
Target Start/End: Complemental strand, 4250606 - 4250562
Alignment:
Q  225 tcatcgtaaatttaattcagttgatagagataatacataatatat 269  Q
    ||||||||||||||||||||||| |||  ||||||||||||||||    
T  4250606 tcatcgtaaatttaattcagttgttaggaataatacataatatat 4250562  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 236 - 276
Target Start/End: Original strand, 14552343 - 14552383
Alignment:
Q  236 ttaattcagttgatagagataatacataatatatacaaggt 276  Q
    |||| |||||||||||||||||| |||||||||||||||||    
T  14552343 ttaactcagttgatagagataatgcataatatatacaaggt 14552383  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 230 - 277
Target Start/End: Original strand, 32460011 - 32460058
Alignment:
Q  230 gtaaatttaattcagttgatagagataatacataatatatacaaggtc 277  Q
    ||||| |||| |||||||||| ||| ||||||||||||||||||||||    
T  32460011 gtaaacttaactcagttgataaagacaatacataatatatacaaggtc 32460058  T

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Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 269
Target Start/End: Original strand, 23928467 - 23928500
Alignment:
Q  236 ttaattcagttgatagagataatacataatatat 269  Q
    ||||||||||||||||||| ||||||||||||||    
T  23928467 ttaattcagttgatagagacaatacataatatat 23928500  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 236 - 277
Target Start/End: Original strand, 26427804 - 26427845
Alignment:
Q  236 ttaattcagttgatagagataatacataatatatacaaggtc 277  Q
    ||||| |||||||||| ||||||||||||||||| |||||||    
T  26427804 ttaatccagttgatagcgataatacataatatatgcaaggtc 26427845  T

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Target: scaffold0045 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 276
Target Start/End: Original strand, 42212 - 42264
Alignment:
Q  224 gtcatcgtaaatttaattcagttgatagagataatacataatatatacaaggt 276  Q
    |||||||| || |||||| ||||||||||||||||  ||||||||| ||||||    
T  42212 gtcatcgtgaacttaatttagttgatagagataatgtataatatatgcaaggt 42264  T

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