View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10114_low_18 (Length: 274)

Name: NF10114_low_18
Description: NF10114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10114_low_18
NF10114_low_18
[»] chr6 (21 HSPs)
chr6 (18-254)||(5065403-5065643)
chr6 (19-251)||(5253651-5253871)
chr6 (22-209)||(5177844-5178035)
chr6 (22-209)||(5279669-5279860)
chr6 (22-209)||(5688902-5689093)
chr6 (38-208)||(5398167-5398341)
chr6 (21-209)||(5126628-5126820)
chr6 (28-208)||(5352863-5353047)
chr6 (23-209)||(5346135-5346325)
chr6 (36-198)||(5100828-5100994)
chr6 (28-198)||(5135929-5136103)
chr6 (23-218)||(23127300-23127499)
chr6 (23-209)||(5180773-5180963)
chr6 (23-209)||(5242511-5242701)
chr6 (23-209)||(5351506-5351696)
chr6 (43-232)||(5098337-5098530)
chr6 (36-198)||(5372216-5372382)
chr6 (36-209)||(5427019-5427196)
chr6 (28-209)||(5448720-5448905)
chr6 (36-209)||(5156012-5156189)
chr6 (31-218)||(5124433-5124624)
[»] chr3 (4 HSPs)
chr3 (79-208)||(47985393-47985524)
chr3 (79-208)||(47994680-47994811)
chr3 (79-208)||(48003967-48004098)
chr3 (79-208)||(48013252-48013383)
[»] chr4 (3 HSPs)
chr4 (31-163)||(25568954-25569090)
chr4 (150-250)||(4132576-4132676)
chr4 (28-209)||(4122643-4122828)
[»] chr7 (1 HSPs)
chr7 (31-209)||(36212920-36213102)
[»] scaffold0294 (2 HSPs)
scaffold0294 (130-207)||(7878-7955)
scaffold0294 (36-73)||(8016-8053)


Alignment Details
Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 21)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 18 - 254
Target Start/End: Complemental strand, 5065643 - 5065403
Alignment:
Q  18 ctcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccataagagat--gcgttaatttcctttgaagacgaggaggggcagagagtag 115  Q
    |||||||| |||||||||||||||||||||||  |||||||||||||| ||||||||   |||||||| ||||||||||| |||||||||||||||||||    
T  5065643 ctcacaaatttgttggtaaaaaattacacaaaatccaccattcagctctataagagagaggcgttaatctcctttgaagatgaggaggggcagagagtag 5065544  T
Q  116 tgtcaagtattgaac--ggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatatgatggact 213  Q
    | |||||||||||||  ||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||     
T  5065543 tatcaagtattgaacctggaaataaagtggattttgttgttgtttttgagaacggtttcgttgtgaagaggacaacagtttatctcatatatgatgaacc 5065444  T
Q  214 gattgctgaaaaagtggaggagtgtcatgcacaagataaga 254  Q
     ||||||||||| | ||||||||||||||||||||||||||    
T  5065443 aattgctgaaaagggggaggagtgtcatgcacaagataaga 5065403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 19 - 251
Target Start/End: Original strand, 5253651 - 5253871
Alignment:
Q  19 tcacaaacttgttggtaaaaaattacacaaaggccaccattcagctccataagagatgcgttaatttcctttgaagacgaggaggggcagagagtagtgt 118  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||              |||| ||||||||||||||||||||||| |||||| | |    
T  5253651 tcacaaatttgttggtaaaaaattacacaaaggccaccattcagctc--------------taatctcctttgaagacgaggaggggcaaagagtattat 5253736  T
Q  119 caagtattgaac--ggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatatgatggactgat 216  Q
     |||||||||||  ||||| |||||||| ||||||||||||||||||||  ||||| ||||||||||||| ||||||||||| |||||||| |  |  ||    
T  5253737 taagtattgaacctggaaataaagtggagtttgttgttgtttttgagaacagtttcattgtgaagaggacgacagtttatctcatatatgacgagcccat 5253836  T
Q  217 tgctgaaaaagtggaggagtgtcatgcacaagata 251  Q
    ||||||||| | |||||||||||||| ||||||||    
T  5253837 tgctgaaaaggcggaggagtgtcatggacaagata 5253871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 22 - 209
Target Start/End: Original strand, 5177844 - 5178035
Alignment:
Q  22 caaacttgttggtaaaaaattacacaaaggccaccattcagctccataagagat--gcgttaatttcctttgaagacgaggaggggcagagagtagtgtc 119  Q
    ||||||||||||| || ||||||||||| ||||||||||||||  ||||||||   || |||   ||||||||||| || ||||| ||||||||||| ||    
T  5177844 caaacttgttggttaagaattacacaaaagccaccattcagctttataagagagaggcattagcctcctttgaagatgaagagggtcagagagtagtatc 5177943  T
Q  120 aagtattgaacg--gaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatatgatg 209  Q
    |||||| ||||   | |||||||||||  ||||||||||||||||||| |||||| |||||||||  ||||||||||||||  |||||||||    
T  5177944 aagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatg 5178035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 22 - 209
Target Start/End: Original strand, 5279669 - 5279860
Alignment:
Q  22 caaacttgttggtaaaaaattacacaaaggccaccattcagctccataagagat--gcgttaatttcctttgaagacgaggaggggcagagagtagtgtc 119  Q
    ||||||||||||| || ||||||||||| ||||||||||||||  ||||||||   || |||   ||||||||||| || ||||| ||||||||||| ||    
T  5279669 caaacttgttggtgaagaattacacaaaagccaccattcagctttataagagagaggcattagcctcctttgaagatgaagagggtcagagagtagtatc 5279768  T
Q  120 aagtattgaacg--gaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatatgatg 209  Q
    |||||| ||||   | |||||||||||  ||||||||||||||||||| |||||| |||||||||  ||||||||||||||  |||||||||    
T  5279769 aagtatagaaccttgtaacaaagtggaggttgttgttgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatg 5279860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 22 - 209
Target Start/End: Complemental strand, 5689093 - 5688902
Alignment:
Q  22 caaacttgttggtaaaaaattacacaaaggccaccattcagctccataagag--atgcgttaatttcctttgaagacgaggaggggcagagagtagtgtc 119  Q
    ||||||||||||| || ||||||||||| ||||||||||||||  |||||||  | || ||| | ||||||||||| || ||||| ||||||||||| ||    
T  5689093 caaacttgttggtgaagaattacacaaaagccaccattcagctttataagagcgaggcattagtctcctttgaagatgaagagggacagagagtagtatc 5688994  T
Q  120 aagtattgaacg--gaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatatgatg 209  Q
    |||||| ||||   | |||||||||||  |||||  |||||||||||| |||||| |||||||||  ||||||||||||||  |||||||||    
T  5688993 aagtatagaaccttgtaacaaagtggaggttgtttctgtttttgagaacggtttcattgtgaagaaaacaacagtttatctcgtatatgatg 5688902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 38 - 208
Target Start/End: Original strand, 5398167 - 5398341
Alignment:
Q  38 aaattacacaaaggccaccattcagctccataagag--atgcgttaatttcctttgaagacgaggaggggcagagagtagtgtcaagtattgaac--gga 133  Q
    |||||||||||||||||||||||||||| |||||||  | |||||| | ||||||||| | || |||||||| || ||||| |||||||| ||||  ||     
T  5398167 aaattacacaaaggccaccattcagctctataagagtgaggcgttattctcctttgaacatgaagaggggcaaagggtagtatcaagtatagaacctggt 5398266  T
Q  134 aacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatatgat 208  Q
    |||||||| ||  ||||  ||||||| ||||||| |||| ||||||||| |||||||||||||||| ||||||||    
T  5398267 aacaaagttgaggttgtctttgttttcgagaatgatttcattgtgaagaagacaacagtttatcttgtatatgat 5398341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 21 - 209
Target Start/End: Complemental strand, 5126820 - 5126628
Alignment:
Q  21 acaaacttgttggtaaaaaattacacaaaggccaccattcagctccataagagat--gcgttaatttcctttgaagacgaggaggggcagagagtagtgt 118  Q
    |||| ||||||||| ||||||||||| |||||||||||||| ||| ||||||||   ||   | | ||||||||||| ||||||||| |||||||||| |    
T  5126820 acaagcttgttggtgaaaaattacacgaaggccaccattcaactctataagagagaggcagcagtctcctttgaagatgaggagggggagagagtagtat 5126721  T
Q  119 caagtattgaac--ggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatatgatg 209  Q
    ||||||| |||   || |||||||| ||  |||||||||||||| |||| |||||| ||||||||| |||| | |||||||| ||||||||||    
T  5126720 caagtatagaagctggtaacaaagttgagattgttgttgtttttaagaacggtttcattgtgaagaagacagctgtttatctcatatatgatg 5126628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 28 - 208
Target Start/End: Complemental strand, 5353047 - 5352863
Alignment:
Q  28 tgttggtaaaaaattacacaaaggccaccattcagctccataagagat--gcgttaatttcctttgaagacgaggaggggcagagagtagtgtcaagtat 125  Q
    ||||| ||||||||||||||||||| |||||||||||  ||||||||   || ||||||||||||||||| |||||||||||||||||||| ||||||||    
T  5353047 tgttgctaaaaaattacacaaaggctaccattcagctttataagagagaggcattaatttcctttgaagatgaggaggggcagagagtagtatcaagtat 5352948  T
Q  126 tgaac--ggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatatgat 208  Q
     || |  ||  ||||||| ||  | ||| ||||||| |||||| ||||| | ||||||| ||||||| |||||||  ||||||||    
T  5352947 ggatcctggtgacaaagtagaggtggttattgttttcgagaattgtttcatcgtgaagaagacaacaatttatctggtatatgat 5352863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 23 - 209
Target Start/End: Original strand, 5346135 - 5346325
Alignment:
Q  23 aaacttgttggtaaaaaattacacaaaggccaccattcagctccataagagat--gcgttaatttcctttgaagacgaggaggggcagagagtagtgtca 120  Q
    |||||||||||| ||||||||||||||||| |||||||||||  | ||||||   ||  ||    |||||||||| |||||||| |||||||| || |||    
T  5346135 aaacttgttggtgaaaaattacacaaaggctaccattcagctatacaagagagaggcagtagccgcctttgaagatgaggagggccagagagttgtatca 5346234  T
Q  121 agtattgaac--ggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatatgatg 209  Q
    ||||| ||||  || |||||||||||  |||| |||||| |||||||||||||| ||||||||| |||| || ||||||| ||||||||||    
T  5346235 agtatagaacctggtaacaaagtggaggttgtcgttgttattgagaatggtttcattgtgaagaagacagcaatttatctcatatatgatg 5346325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 36 - 198
Target Start/End: Complemental strand, 5100994 - 5100828
Alignment:
Q  36 aaaaattacacaaaggccaccattcagctccataaga--gatgcgttaatttcctttgaagacgaggaggggcagagagtagtgtcaagtattgaa--cg 131  Q
    |||||||||||||||||||||||||||||| ||||||  || || ||| | ||||||||||| |||||||  | ||| ||||| |||||||| |||  ||    
T  5100994 aaaaattacacaaaggccaccattcagctctataagagcgaggcattagtctcctttgaagatgaggaggctctgagggtagtatcaagtatagaacccg 5100895  T
Q  132 gaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatct 198  Q
    | |||||||||||  | |||||||||||||||||  ||||| ||||||| | |||| ||||||||||    
T  5100894 gtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatct 5100828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 28 - 198
Target Start/End: Complemental strand, 5136103 - 5135929
Alignment:
Q  28 tgttggtaaaaaattacacaaaggccaccattcagctccataaga--gatgcgttaatttcctttgaagacgaggaggggcagagagtagtgtcaagtat 125  Q
    |||||||||||||||||||||||||||||||||||||| | ||||  || || |||   ||||||||||| |||||||  | ||| ||||| ||||||||    
T  5136103 tgttggtaaaaaattacacaaaggccaccattcagctctacaagagcgaagcattagcctcctttgaagatgaggaggctctgagggtagtatcaagtat 5136004  T
Q  126 tgaa--cggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatct 198  Q
     |||  ||| |||||||||||  | |||||||||||||||||  ||||| ||||||| | |||| ||||||||||    
T  5136003 agaacccggtaacaaagtggaggtcgttgttgtttttgagaacagtttcattgtgaaaaagacagcagtttatct 5135929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 23 - 218
Target Start/End: Complemental strand, 23127499 - 23127300
Alignment:
Q  23 aaacttgttggtaaaaaattacacaaaggccaccattcagctccataagagatg--cgttaatttcctttgaagacgaggaggggcagagagtagtgtca 120  Q
    |||| ||||||||||||||||||||||||  ||||||||| || ||||||||    | ||| | || || ||||| ||||| ||| ||||  |||| |||    
T  23127499 aaacgtgttggtaaaaaattacacaaagggtaccattcagatctataagagagagacattagtctcgttcgaagatgaggaagggaagagcttagtatca 23127400  T
Q  121 agtattgaac--ggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatatgatggactgattg 218  Q
    |||   ||||  || |||||| ||||  ||||||| ||||||||||||||||||||||||||||  ||||||||||||||| ||||||||| ||| ||||    
T  23127399 agtgcagaacctggtaacaaaatggaggttgttgtcgtttttgagaatggtttcgttgtgaagaatacaacagtttatcttgtatatgatgaactaattg 23127300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 23 - 209
Target Start/End: Complemental strand, 5180963 - 5180773
Alignment:
Q  23 aaacttgttggtaaaaaattacacaaaggccaccattcagctccataaga--gatgcgttaatttcctttgaagacgaggaggggcagagagtagtgtca 120  Q
    |||| |||| || ||||||||||||||||| |||||||||||| ||||||  ||| ||||| | || |||||||| || ||||| ||||| ||||| |||    
T  5180963 aaacatgttagttaaaaattacacaaaggctaccattcagctctataagagtgatacgttagtctcttttgaagatgaagagggtcagagggtagtatca 5180864  T
Q  121 agtattgaa--cggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatatgatg 209  Q
    || || |||  ||| |||||||||||  | ||| |||||||||||||  ||||| ||||||||| |||| || |||||||  |||||||||    
T  5180863 agcatagaacccggtaacaaagtggaggtcgtttttgtttttgagaaaagtttcattgtgaagaagacagcaatttatctggtatatgatg 5180773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 209
Target Start/End: Complemental strand, 5242701 - 5242511
Alignment:
Q  23 aaacttgttggtaaaaaattacacaaaggccaccattcagctccataagagat--gcgttaatttcctttgaagacgaggaggggcagagagtagtgtca 120  Q
    ||||||||| || |||||||||||||||||||||||||||||| | ||||||   ||  ||    |||||||||| ||| |||||| ||||||||| | |    
T  5242701 aaacttgttagtgaaaaattacacaaaggccaccattcagctctacaagagagaggcagtagccgcctttgaagatgagaaggggctgagagtagtatga 5242602  T
Q  121 agtattgaac--ggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatatgatg 209  Q
    ||||| ||||  || |||||||||||  | ||| |||||||||||||  ||||| ||||||||| ||||  |||||||||  |||||||||    
T  5242601 agtatagaacctggtaacaaagtggaggtcgtttttgtttttgagaacagtttcattgtgaagaagacagtagtttatctcgtatatgatg 5242511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 23 - 209
Target Start/End: Original strand, 5351506 - 5351696
Alignment:
Q  23 aaacttgttggtaaaaaattacacaaaggccaccattcagctccataaga--gatgcgttaatttcctttgaagacgaggaggggcagagagtagtgtca 120  Q
    |||| |||| || ||||||||||||||||||||||||| |||| ||||||  || || ||| ||||||||||||| ||||||||||||||  |||| |||    
T  5351506 aaacatgttagtgaaaaattacacaaaggccaccattcggctctataagagtgaggcattagtttcctttgaagatgaggaggggcagaggttagtatca 5351605  T
Q  121 agtattgaa--cggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatatgatg 209  Q
    ||||| |||  | | |||||||||||  |  || ||||||| ||||||| || | ||||||| | ||||  |||||||||  |||||||||    
T  5351606 agtatagaacccagtaacaaagtggaggtcatttttgttttcgagaatgattgcattgtgaaaaagacagtagtttatctcgtatatgatg 5351696  T

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Target: chr6; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 43 - 232
Target Start/End: Original strand, 5098337 - 5098530
Alignment:
Q  43 acacaaaggccaccattcagctccataagag--atgcgttaatttcctttgaagacgaggaggggcagagagtagtgtcaagtattgaac--ggaaacaa 138  Q
    ||||||||||||||||||||||| |||||||  | || ||  | ||||||||||| |||||| | ||||| ||| | |||||||| ||||  || |||||    
T  5098337 acacaaaggccaccattcagctctataagagtgaggcattggtctcctttgaagatgaggagagccagagggtaatatcaagtatagaacctggtaacaa 5098436  T
Q  139 agtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatatgatggactgattgctgaaaaagtggag 232  Q
    ||||||  |  |||||||||| |||||  ||||| ||||||| | |||| ||||||||||  ||||||||| ||  |||| |||||||||||||    
T  5098437 agtggaggtcattgttgttttcgagaacagtttcattgtgaaaaagacagcagtttatctggtatatgatgaacaaattggtgaaaaagtggag 5098530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 36 - 198
Target Start/End: Original strand, 5372216 - 5372382
Alignment:
Q  36 aaaaattacacaaaggccaccattcagctccataaga--gatgcgttaatttcctttgaagacgaggaggggcagagagtagtgtcaagtattgaac--g 131  Q
    |||||||||||||||||||||||||||||  ||||||  || || ||| | ||||||||||| || ||||||||||| ||||| |||||| | ||||  |    
T  5372216 aaaaattacacaaaggccaccattcagctttataagagtgaagcattagtctcctttgaagatgaagaggggcagagggtagtatcaagtctagaacctg 5372315  T
Q  132 gaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatct 198  Q
    | |||||||||||  |   | ||||| | ||||||| |||| ||||||||| ||||||| |||||||    
T  5372316 gtaacaaagtggagatccattttgttctcgagaatgatttcattgtgaagaagacaacaatttatct 5372382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 36 - 209
Target Start/End: Original strand, 5427019 - 5427196
Alignment:
Q  36 aaaaattacacaaaggccaccattcagctccataagag--atgcgttaatttcctttgaagacgaggaggggcagagagtagtgtcaagtattgaac--g 131  Q
    ||||||||||||||||||| |||||||||  |||||||  | |  ||| | || |||||||| ||||||||| | |||||||| |||||||| ||||  |    
T  5427019 aaaaattacacaaaggccatcattcagctttataagagtgaggtattagtgtcatttgaagatgaggagggggaaagagtagtatcaagtatagaacctg 5427118  T
Q  132 gaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatatgatg 209  Q
    | |||||| ||||  | ||| |||||||||||||  |||||||||||| || ||||  |||||||||  |||||||||    
T  5427119 gtaacaaaatggaggtcgtttttgtttttgagaacagtttcgttgtgacgaagacagtagtttatctcgtatatgatg 5427196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 28 - 209
Target Start/End: Original strand, 5448720 - 5448905
Alignment:
Q  28 tgttggtaaaaaattacacaaaggccaccattcagctccataagag--atgcgttaatttcctttgaagacgaggaggggcagagagtagtgtcaagtat 125  Q
    ||||||| ||||||||||||||||| ||||||||  || |||||||  |  | ||| |||||||||||||  |||||||||||||  |||| ||||||||    
T  5448720 tgttggtgaaaaattacacaaaggctaccattcaaatctataagagtgagacattagtttcctttgaagataaggaggggcagaggttagtatcaagtat 5448819  T
Q  126 tgaa--cggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatatgatg 209  Q
     |||  |||||||||||||||  | ||| ||||||| ||||||| ||||  |||| ||| ||||  ||| |||||  |||||||||    
T  5448820 agaacccggaaacaaagtggagatcgtttttgttttcgagaatgatttcactgtggagaagacagtagtatatctggtatatgatg 5448905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 36 - 209
Target Start/End: Complemental strand, 5156189 - 5156012
Alignment:
Q  36 aaaaattacacaaaggccaccattcagctccataaga--gatgcgttaatttcctttgaagacgaggaggggcagagagtagtgtcaagtattgaac--g 131  Q
    |||||||||||||||||||||||||||||  ||||||  || || ||    ||||||||||| || ||||||||||| ||||| |||||| | ||||  |    
T  5156189 aaaaattacacaaaggccaccattcagctttataagagtgaggcattggcctcctttgaagatgaagaggggcagagggtagtatcaagtctagaacctg 5156090  T
Q  132 gaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatatgatg 209  Q
    | |||||||||||  |   | ||||||| |||| |  |||| ||||||||| |||||||||||||||| |||| ||||    
T  5156089 gtaacaaagtggaggtccattttgttttcgagattaatttcattgtgaagaagacaacagtttatcttgtatacgatg 5156012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 218
Target Start/End: Complemental strand, 5124624 - 5124433
Alignment:
Q  31 tggtaaaaaattacacaaaggccaccattcagctccataagaga--tgcgttaatttcctttgaagacgaggaggggcagagagtagtgtcaagtattga 128  Q
    |||| ||||||||||| ||||  |||||||| ||| ||||||||  ||| ||| |  | ||| |||| ||||||||||| ||| |||| || ||||| ||    
T  5124624 tggtgaaaaattacacgaaggggaccattcaactctataagagagatgcattagtcgcatttcaagaggaggaggggcatagattagtatcgagtataga 5124525  T
Q  129 ac--ggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatatgatggactgattg 218  Q
    ||  || || |||||||| |||||| |||||||| ||||  | ||| ||||||||  ||||||| | ||| |||||||||||| ||||||||    
T  5124524 acctggtaataaagtggaatttgtttttgtttttaagaaccgcttcattgtgaaggagacaacaatgtatattatatatgatgaactgattg 5124433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 65; Significance: 1e-28; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 79 - 208
Target Start/End: Complemental strand, 47985524 - 47985393
Alignment:
Q  79 ttaatttcctttgaagacgaggaggggcagagagtagtgtcaagtattgaac--ggaaacaaagtggattttgttgttgtttttgagaatggtttcgttg 176  Q
    ||||| ||||||| ||| ||||||||| |||||||||| |||||||| ||||  || |||||||||||  | |||||||||||||||||||||||| |||    
T  47985524 ttaatctcctttggagatgaggagggggagagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattg 47985425  T
Q  177 tgaagaggacaacagtttatcttatatatgat 208  Q
    ||||||||| | ||||||||||| ||||||||    
T  47985424 tgaagaggatagcagtttatcttgtatatgat 47985393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 79 - 208
Target Start/End: Complemental strand, 47994811 - 47994680
Alignment:
Q  79 ttaatttcctttgaagacgaggaggggcagagagtagtgtcaagtattgaa--cggaaacaaagtggattttgttgttgtttttgagaatggtttcgttg 176  Q
    ||||| ||||||| ||| ||||||||| |||||||||| |||||||| |||  ||| |||||||||||  | |||||||||||||||||||||||| |||    
T  47994811 ttaatctcctttggagatgaggagggggagagagtagtatcaagtatagaatccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattg 47994712  T
Q  177 tgaagaggacaacagtttatcttatatatgat 208  Q
    ||||||||| | ||||||||||| ||||||||    
T  47994711 tgaagaggatagcagtttatcttgtatatgat 47994680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 79 - 208
Target Start/End: Complemental strand, 48004098 - 48003967
Alignment:
Q  79 ttaatttcctttgaagacgaggaggggcagagagtagtgtcaagtattgaac--ggaaacaaagtggattttgttgttgtttttgagaatggtttcgttg 176  Q
    ||||| ||||||| ||| ||||||||| |||||||||| |||||||| ||||  || |||||||||||  | |||||||||||||||||||||||| |||    
T  48004098 ttaatctcctttggagatgaggagggggagagagtagtatcaagtatagaacccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattg 48003999  T
Q  177 tgaagaggacaacagtttatcttatatatgat 208  Q
    ||||||||| | ||||||||||| ||||||||    
T  48003998 tgaagaggatagcagtttatcttgtatatgat 48003967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 79 - 208
Target Start/End: Complemental strand, 48013383 - 48013252
Alignment:
Q  79 ttaatttcctttgaagacgaggaggggcagagagtagtgtcaagtattgaa--cggaaacaaagtggattttgttgttgtttttgagaatggtttcgttg 176  Q
    ||||| ||||||| ||| ||||||||| |||||||||| |||||||| |||  ||| |||||||||||  | |||||||||||||||||||||||| |||    
T  48013383 ttaatctcctttggagatgaggagggggagagagtagtatcaagtatagaatccggtaacaaagtggaggtggttgttgtttttgagaatggtttcattg 48013284  T
Q  177 tgaagaggacaacagtttatcttatatatgat 208  Q
    ||||||||| | ||||||||||| ||||||||    
T  48013283 tgaagaggatagcagtttatcttgtatatgat 48013252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 7e-18; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 31 - 163
Target Start/End: Original strand, 25568954 - 25569090
Alignment:
Q  31 tggtaaaaaattacacaaaggccaccattcagctccataagagat--gcgttaatttcctttgaagacgaggaggggcagagagtagtgtcaagtattga 128  Q
    |||| ||||||||||| ||| ||||||||||| || | ||||||   || ||| ||||||||||| ||||||||||||| | |||||| |||||||| ||    
T  25568954 tggtgaaaaattacaccaagtccaccattcaggtctacaagagagaggcattagtttcctttgaaaacgaggaggggcatatagtagtatcaagtataga 25569053  T
Q  129 ac--ggaaacaaagtggattttgttgttgtttttgag 163  Q
    ||  ||||||||||||||  ||||| |||||||||||    
T  25569054 acctggaaacaaagtggaggttgtttttgtttttgag 25569090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 250
Target Start/End: Complemental strand, 4132676 - 4132576
Alignment:
Q  150 ttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatatgatggactgattgctgaaaaagtggaggagtgtcatgcacaaga 249  Q
    |||||||||||| |||  ||||| |||||| || |||| |||||||||| |||||||||| ||  |||| ||||||  ||| | | ||||||||||||||    
T  4132676 ttgttgtttttgggaacagtttcattgtgatgaagacagcagtttatctcatatatgatgaaccaattggtgaaaatttggggcaatgtcatgcacaaga 4132577  T
Q  250 t 250  Q
    |    
T  4132576 t 4132576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 28 - 209
Target Start/End: Complemental strand, 4122828 - 4122643
Alignment:
Q  28 tgttggtaaaaaattacacaaaggccaccattcagctccataagagat--gcgttaatttcctttgaagacgaggaggggcagagagtagtgtcaagtat 125  Q
    ||||||| | |||| |||||||| |||||||||| ||| ||||||||   ||||||   ||||| ||| | |||||  || ||||||| || |||| |||    
T  4122828 tgttggtgataaatcacacaaagaccaccattcaactctataagagagaggcgttatcctccttagaaaatgaggaatggaagagagtggtatcaaatat 4122729  T
Q  126 tgaac--ggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatatgatg 209  Q
     ||||  ||  ||||||||||  |||||||||||||||  ||  ||||| |||||| || |||| |||||||||| ||||||||||    
T  4122728 ggaacctggtgacaaagtggagattgttgttgtttttggaaacagtttcattgtgatgaagacatcagtttatctcatatatgatg 4122643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 209
Target Start/End: Complemental strand, 36213102 - 36212920
Alignment:
Q  31 tggtaaaaaattacacaaaggccaccattcagctccataagagat--gcgttaatttcctttgaagacgaggaggggcagagagtagtgtcaagtattga 128  Q
    ||||||||||| |||||||||| ||||||||| || ||||||||   || ||| | || |||||||| ||||||||||||||| |||| |||||||| ||    
T  36213102 tggtaaaaaatcacacaaaggctaccattcagatctataagagagaggcattagtctcatttgaagatgaggaggggcagagattagtatcaagtataga 36213003  T
Q  129 ac--ggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatatgatg 209  Q
    ||  ||  | ||| ||||  |||||||||||||||||||   |||| ||||||||| |||| |  ||||||| || |||||||    
T  36213002 acctggtgataaaatggaggttgttgttgtttttgagaacaatttcattgtgaagaagacagcgatttatctcatttatgatg 36212920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 30; Significance: 0.00000009; HSPs: 2)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 130 - 207
Target Start/End: Complemental strand, 7955 - 7878
Alignment:
Q  130 cggaaacaaagtggattttgttgttgtttttgagaatggtttcgttgtgaagaggacaacagtttatcttatatatga 207  Q
    |||||||||||||||  ||||||||||||||| | | |||||| ||| |||    |||||| ||||||||||||||||    
T  7955 cggaaacaaagtggaggttgttgttgtttttggggacggtttcattgcgaaagaaacaacaatttatcttatatatga 7878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 36 - 73
Target Start/End: Complemental strand, 8053 - 8016
Alignment:
Q  36 aaaaattacacaaaggccaccattcagctccataagag 73  Q
    ||||||||||||||||||||||||||| || |||||||    
T  8053 aaaaattacacaaaggccaccattcagatctataagag 8016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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