View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10114_low_21 (Length: 257)
Name: NF10114_low_21
Description: NF10114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10114_low_21 |
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| [»] chr3 (4 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 1 - 257
Target Start/End: Complemental strand, 42210814 - 42210558
Alignment:
| Q |
1 |
tctccaaggtaacaacaaactatgtggccttaacaatcaagttatgcacaagttaggagtcactttgtgtgttgcaggtaagaaaaacaagagaaacatt |
100 |
Q |
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| T |
42210814 |
tctccaaggtaacaacaaactatgtggccttaacaatcaagttatgcacaagttaggagtcactttgtgtgttgcaggtaagaaaaacaagagaaacatt |
42210715 |
T |
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| Q |
101 |
ttactacctatcatactagcgattataggtgcggctgttttgtttgcttcaatgatctatctattttggctgctaatgtccttaaagaagaaacacaagg |
200 |
Q |
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| T |
42210714 |
ttactacctatcatactagcgattataggtgcggctgttttgtttgcttcaatgatctatctattttggctgctaatgtccttaaagaagaaacacaagg |
42210615 |
T |
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| Q |
201 |
cagagaaaacaagtttgtcatcaactactataaaagggttgcatcaaaatatatcct |
257 |
Q |
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| T |
42210614 |
cagagaaaacaagtttgtcatcaactactataaaagggttgcatcaaaatatatcct |
42210558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 33701067 - 33701289
Alignment:
| Q |
1 |
tctccaaggtaacaacaaactatgtggccttaacaatcaagttatgcacaagttaggagtcactttgtgtgttgcaggtaagaaaaacaagagaaacatt |
100 |
Q |
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| T |
33701067 |
tctccaaggtaacaacaaactatgtggcgttaacaatgaagttacccacaagttaggagtcactttgtgtgttgcatctaagaaaaacaaaacaaacatt |
33701166 |
T |
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| Q |
101 |
ttactacctatcatactagcgattataggtgcggctgttttgtttgcttcaatgatctatctattttggctgctaatgtccttaaagaagaaacacaagg |
200 |
Q |
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| T |
33701167 |
ttactacctatcatactagcgattataggtgctgctgttttgttcgcttcaatgatctatctattttggctgctaatgtccttaaagaagaaacacaagg |
33701266 |
T |
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| Q |
201 |
cagagaaaacaagtttgtcatca |
223 |
Q |
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| T |
33701267 |
cggagaaaacaagtttgtcatca |
33701289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 42198238 - 42197983
Alignment:
| Q |
1 |
tctccaaggtaacaacaaactatgtggccttaacaatcaagttatgcacaagttaggagtcactttgtgtgttgcaggtaagaaaaacaagagaaacatt |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||| ||| |||||||||||||| |
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| T |
42198238 |
tctccaaggtaacaacaaactatgcggccttaacaatcaagttatgcacaagttgggagtaactttgtatgttgcaggtaaaaaacacaagagaaacatt |
42198139 |
T |
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| Q |
101 |
ttactacctatcatactagcgattataggtgcggctgttttgtttgcttcaatgatctatctattttggctgctaatgtccttaaag-aagaaacacaag |
199 |
Q |
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| T |
42198138 |
ttactccctatcatactaccaattacaggttctactgttttgttcacgtcaattctctatctactgtggctgcaaatgtccttaaagaaagaaacacaag |
42198039 |
T |
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| Q |
200 |
gcagagaaaacaagtttgtcatcaactactataaaagggttgcatcaaaatatatc |
255 |
Q |
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| T |
42198038 |
gtggagaaaacaagtttgtcatcaactcctctaaattggttgcctcaaaatgtatc |
42197983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 3 - 90
Target Start/End: Complemental strand, 42223028 - 42222941
Alignment:
| Q |
3 |
tccaaggtaacaacaaactatgtggccttaacaatcaagttatgcacaagttaggagtcactttgtgtgttgcaggtaagaaaaacaa |
90 |
Q |
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| T |
42223028 |
tccaaggtaacaacaaactatgtggccttaacaatgaagttatgcacacgttaggagtcacatcgtgtctcacaggtaagaaaaacaa |
42222941 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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