View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10114_low_22 (Length: 250)
Name: NF10114_low_22
Description: NF10114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10114_low_22 |
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| [»] chr7 (5 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 233; Significance: 1e-129; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 6 - 250
Target Start/End: Complemental strand, 38313437 - 38313194
Alignment:
| Q |
6 |
aggagcagagaattgattaagttggcttgtgataaacatggtttttcaatataataattgctatgttttctgatgatctttgaaactgaatgcagggaaa |
105 |
Q |
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| T |
38313437 |
aggagaagagaattgattaagttggcttgtgataaacatggtttttcaat-taataattgctatgttttctgatgatctttgaaactgaatgcagggaaa |
38313339 |
T |
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| Q |
106 |
gtaattctagaagctgtcatattgactactgtggttgtgttcagcttgactctctacacattttgggccgcaaaaagaggtcatgattttagctttttgg |
205 |
Q |
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| T |
38313338 |
gtaattctagaagctgtcatattgactactgtggttgtgttcagcttgactctctacacattttgggccgcaaaaagaggtcatgattttagctttttgg |
38313239 |
T |
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| Q |
206 |
gcccattcttgtttgcagctttgttggttcttctcgtctttgcct |
250 |
Q |
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| T |
38313238 |
gcccattcttgtttgcagctttgttggttcttctcgtctttgcct |
38313194 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 95 - 217
Target Start/End: Complemental strand, 38280456 - 38280334
Alignment:
| Q |
95 |
atgcagggaaagtaattctagaagctgtcatattgactactgtggttgtgttcagcttgactctctacacattttgggccgcaaaaagaggtcatgattt |
194 |
Q |
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| T |
38280456 |
atgcagggaaagtcattctagtatctgttatatcaactactgcagttgtgttcagcttgactctttacacattttgggccgcaagaagaggtcatgattt |
38280357 |
T |
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| Q |
195 |
tagctttttgggcccattcttgt |
217 |
Q |
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| T |
38280356 |
cagctttttaggcccattcttgt |
38280334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 95 - 237
Target Start/End: Complemental strand, 38275533 - 38275391
Alignment:
| Q |
95 |
atgcagggaaagtaattctagaagctgtcatattgactactgtggttgtgttcagcttgactctctacacattttgggccgcaaaaagaggtcatgattt |
194 |
Q |
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| T |
38275533 |
atgcagggaaagccattctagtatctgttatatcaactactgcagttgcgttcagcttgactctttacacattttgggccgcaaagagaggtcatgattt |
38275434 |
T |
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| Q |
195 |
tagctttttgggcccattcttgtttgcagctttgttggttctt |
237 |
Q |
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| T |
38275433 |
cagcattttgggccgattcttgttcgaggctttgttggttctt |
38275391 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 95 - 237
Target Start/End: Complemental strand, 38271782 - 38271640
Alignment:
| Q |
95 |
atgcagggaaagtaattctagaagctgtcatattgactactgtggttgtgttcagcttgactctctacacattttgggccgcaaaaagaggtcatgattt |
194 |
Q |
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| T |
38271782 |
atgcagggaaagcaattctagtatctgttatatcaactattgcagttgtgttcagcttgactctttacacatattgggccgcaaaaagaggtcatgattt |
38271683 |
T |
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| Q |
195 |
tagctttttgggcccattcttgtttgcagctttgttggttctt |
237 |
Q |
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| T |
38271682 |
cggctctttagaccgattcttgttgggagctttgttggttctt |
38271640 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 94 - 235
Target Start/End: Complemental strand, 38303395 - 38303254
Alignment:
| Q |
94 |
aatgcagggaaagtaattctagaagctgtcatattgactactgtggttgtgttcagcttgactctctacacattttgggccgcaaaaagaggtcatgatt |
193 |
Q |
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| T |
38303395 |
aatgtaggaaaagtaattttagaagctgtcatattaactaatgtggttgtgttgagtttgactctctacacgtcttgggctgcaaaaagatgttatgatt |
38303296 |
T |
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| Q |
194 |
ttagctttttgggcccattcttgtttgcagctttgttggttc |
235 |
Q |
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| T |
38303295 |
tcagctttttagctccattcttgattggagctttgttagttc |
38303254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 102 - 220
Target Start/End: Original strand, 31700990 - 31701108
Alignment:
| Q |
102 |
gaaagtaattctagaagctgtcatattgactactgtggttgtgttcagct-tgactctctacacattttgggccgcaaaaagaggtcatgattttagctt |
200 |
Q |
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|||||||||||| |||||||| ||||||||| ||||||| ||| | |||| |||||||||||||||||||||| |||| ||||| ||||||| | ||| |
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| T |
31700990 |
gaaagtaattctggaagctgttatattgactgctgtggtggtgat-agctctgactctctacacattttgggctgcaagtagaggctatgatttcaactt |
31701088 |
T |
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| Q |
201 |
tttgggcccattcttgtttg |
220 |
Q |
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| T |
31701089 |
ccttggccccttcttgtttg |
31701108 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 163
Target Start/End: Complemental strand, 16238565 - 16238514
Alignment:
| Q |
111 |
tctagaagctgtcatattgactactgtggttgtgttcagcttgactctctaca |
163 |
Q |
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| T |
16238565 |
tctagaagctattatattgactatt-tggttgtgttcagcttgattctctaca |
16238514 |
T |
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