View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10114_low_6 (Length: 539)
Name: NF10114_low_6
Description: NF10114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10114_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 456; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 1 - 522
Target Start/End: Original strand, 8930055 - 8930578
Alignment:
| Q |
1 |
aataattagaaagaagcagaaaaagtagggcggtttaaggtttgtaactaaactaagtatattagataatagtattaatattcactctgatttataaaat |
100 |
Q |
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| T |
8930055 |
aataattagaaagaagcagaaaaagtagggcggtttaaggtttgtaactaaactaagtatattagataatagtattaatattcactctgatttataaaat |
8930154 |
T |
|
| Q |
101 |
ttgtatggagaatttcaacttt-gtcataatattcttgattaggaccacaaatacaacttcaccaatctgtgtcgaataatgaatggctaatgtaaaaca |
199 |
Q |
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| T |
8930155 |
ttgtatggagaatttcaactttagtcataatattcttgattaggaccacaaatacaacttcaccaatctgtgtcgaataatgaatggctaatgtaaaaca |
8930254 |
T |
|
| Q |
200 |
acaaaacaaattttcatcatgttacataatctagtggtgttaaactgaaacaagtttgtgttgtataagattcatgtgcattctcagcctccagactcat |
299 |
Q |
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|||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8930255 |
acaaaacaaattttcatcatgttacaaaatctattggtgttaaactgaaacaagtttgtgttgtataagattcatgtgcattctcagcctccagactcat |
8930354 |
T |
|
| Q |
300 |
tacacatgaacagtccgatacattaaagtttttgcatatgcagagtccggaaaccataatcga-nnnnnnnnactcaagaacaatacagaaattgcattt |
398 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||| ||| |
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| T |
8930355 |
tacacatgaacagtccgatacattaaagtttttgcgtatgcagagtccggaaaccatactcgatttttttttactcaagaacaatacagaaattgcgttt |
8930454 |
T |
|
| Q |
399 |
tttgtttatttatgaaattgtggttttaattaatacgacaaatctgaatgcatcgtgggtttgttgaaattacggtgagctaccataagtttacaaaaga |
498 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
8930455 |
tttgtttatttatgaaattgtggttttaattaatacgacaaatctgaatgcatcgtgggtttgttgaaattacggtgagctaccatatttttacaaaaga |
8930554 |
T |
|
| Q |
499 |
tacacgttgtggctcatcgtaatt |
522 |
Q |
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|||||||||||||||||||||||| |
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| T |
8930555 |
tacacgttgtggctcatcgtaatt |
8930578 |
T |
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