View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10114_low_9 (Length: 452)
Name: NF10114_low_9
Description: NF10114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10114_low_9 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 11 - 452
Target Start/End: Original strand, 53699288 - 53699730
Alignment:
| Q |
11 |
cagagaccattcagccataagcttgaatatgccaaattgaaaagatgcaaatcaaagaaatgagttcaaacatctttccaccataagcttgaataggcca |
110 |
Q |
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| T |
53699288 |
cagagaccattcagccataagcttgaatatgccaaattgaaaagatgcaaatcaaagaaatgagttcaaacatctttccaccataagcttgaataggcca |
53699387 |
T |
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| Q |
111 |
attcaaataaatctttcaaggtaggaggatattgataaaatgaccgcttcaatatatt-attaactgttgttgttcgagaaagtctttgataatttgtgg |
209 |
Q |
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| T |
53699388 |
attcaaataaatctttcaaggtaggaggatattgataaaatgaccgcttcaatatatttattaactgttgttgttcgagaaagtctttgataatttgtgg |
53699487 |
T |
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| Q |
210 |
cagaaaagaatagtagtggtaaatttagccatatatatttgaattaaaacccaagatgtttgttatatgaaatctaagttcattttaattctaaacaaac |
309 |
Q |
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| T |
53699488 |
cagaaaagaatagtagtggtaaatttagccatatatatttgaattaaaacccaagatgtttgttatatgcaatctaagttcattttaattctaaacaaac |
53699587 |
T |
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| Q |
310 |
tgaatacttgaaaggtcctcttaacggtaacagcaaaactttgcatgcaagtattgttactaaacatgtttgcaaaaatatttttacgtatatggagttg |
409 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||| |||| |
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| T |
53699588 |
tgaatacttgaaaggtcctcttaacagtaacagcaaaactttgcatgcaagtattgttactaaacatgtttgcaaaactaatttcacgtatatggtgttg |
53699687 |
T |
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| Q |
410 |
ctactcccacaatctaatttttgtgaacaacattttatatcgt |
452 |
Q |
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| T |
53699688 |
ctactcccacaaactaatttttgtgaacaacaatttatatcgt |
53699730 |
T |
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