View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10115_high_2 (Length: 443)
Name: NF10115_high_2
Description: NF10115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10115_high_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 20 - 422
Target Start/End: Complemental strand, 11860082 - 11859671
Alignment:
| Q |
20 |
agcattccatcttgaactctttcccgcatcacatccatggtgatgttttcgttaccagtgatttcttgcgttgcgagtttatgcatcaaccgattcattc |
119 |
Q |
| |
|
||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||||| |
|
|
| T |
11860082 |
agcattccatcttgaaccctttcccccatcacatccacggtgatgttttcgttaccagcgatttcttgccttgcgagtttatgcatcaacggattcattc |
11859983 |
T |
|
| Q |
120 |
tatataagtagttgttc---------ctcacaacaccgcagtactgatggtggtcactttcttttttcgctttatggaaaaccagaggaacgaagtcttc |
210 |
Q |
| |
|
|||| ||| |||||||| |||||||||||||||||| | ||| ||||||||||| || ||||| ||||||||||| |||||| ||||||| |
|
|
| T |
11859982 |
tatacaagcagttgttcatattgttcctcacaacaccgcagtaccggaggtagtcactttcttcttccgcttgatggaaaaccaaaggaacaaagtcttt |
11859883 |
T |
|
| Q |
211 |
gaaacaagcttgaccaaattgttgttctgggttgacaagaaacccttcagcagtccagagttgaattaatctctctgcatcaatcaaataatcttctgga |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
11859882 |
gaaacaagcttgaccaaattgttgttctggattgataagaaacccttcagccgtccagagttgaatcaatctctctgcatcaatcaaataatcttctgga |
11859783 |
T |
|
| Q |
311 |
aacaatgaacaatatgcaaagcataacttctgataagtgggaaaattgtcgtaatagataaacttaagcatttccattgcttctggaatccagttgtcac |
410 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||| | ||||| |||||||||||||||| |
|
|
| T |
11859782 |
aacaatgaacaatatgcgaagcataacttctgataagtgggaaggttgtcgtaatagataaacttaagcgtttctaatgctttcggaatccagttgtcac |
11859683 |
T |
|
| Q |
411 |
caccaccaccac |
422 |
Q |
| |
|
||| |||||||| |
|
|
| T |
11859682 |
cacgaccaccac |
11859671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 33 - 430
Target Start/End: Complemental strand, 11827934 - 11827528
Alignment:
| Q |
33 |
gaactctttcccgcatcacatccatggtgatgttttcgttaccagtgatttcttgcgttgcgagtttatgcatcaaccgattcattctatataagtagtt |
132 |
Q |
| |
|
||||||| |||| ||||||||||| |||||||||||||| ||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
11827934 |
gaactctctcccccatcacatccacggtgatgttttcgtcaccagcaatttcttgtcttgcgagtttatgcattaaccgattcattctatataagtagtt |
11827835 |
T |
|
| Q |
133 |
gttc---------ctcacaacaccgcagtactgatggtggtcactttcttttttcgctttatggaaaaccagaggaacgaagtcttcgaaacaagcttga |
223 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||| || ||||| ||||||||||| |||||| ||||||||||||||||| ||| |
|
|
| T |
11827834 |
gttcatgttgttcctcacaacaccgcagtacttctggtggtcactttcttcttccgcttgatggaaaaccaaaggaacaaagtcttcgaaacaagcatga |
11827735 |
T |
|
| Q |
224 |
ccaaattgttgttctgggttgacaagaaacccttcagcagtccagagttgaattaatctctctgcatcaatcaaataatcttctggaaacaatgaacaat |
323 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11827734 |
ccaaattgttgttctggattgataagaaacccttcaccagtccagagttgaatcaatctctctgcatcaatcaaataatcttctggaaacaatgaacaat |
11827635 |
T |
|
| Q |
324 |
atgcaaagcataacttctgataagtgggaaaattgtcgtaatagataaacttaagcatttccattgcttctggaatccagttgtcaccaccaccaccact |
423 |
Q |
| |
|
||||||||||||| |||||||||||||||| || |||||||||||||| ||| | | |||| | |||||| ||||||| | ||||||||| ||||||| |
|
|
| T |
11827634 |
atgcaaagcataatttctgataagtgggaagatcgtcgtaatagataagcttcaccttttctagtgcttcccgaatccattcttcaccaccaacaccact |
11827535 |
T |
|
| Q |
424 |
ttgcttc |
430 |
Q |
| |
|
|||||| |
|
|
| T |
11827534 |
atgcttc |
11827528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 248 - 370
Target Start/End: Complemental strand, 12038604 - 12038482
Alignment:
| Q |
248 |
agaaacccttcagcagtccagagttgaattaatctctctgcatcaatcaaataatcttctggaaacaatgaacaatatgcaaagcataacttctgataag |
347 |
Q |
| |
|
||||| |||||||| ||||| ||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| | |
|
|
| T |
12038604 |
agaaatccttcagccgtccaaagttgaattaatctctcggcatcaattaaataatcttctggaaacaatgaacaatatgcaaagcacaacttctgatacg |
12038505 |
T |
|
| Q |
348 |
tgggaaaattgtcgtaatagata |
370 |
Q |
| |
|
|||||| || |||||||||||| |
|
|
| T |
12038504 |
tgggaagatcttcgtaatagata |
12038482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 185 - 339
Target Start/End: Original strand, 11902616 - 11902770
Alignment:
| Q |
185 |
tggaaaaccagaggaacgaagtcttcgaaacaagcttgaccaaattgttgttctgggttgacaagaaacccttcagcagtccagagttgaattaatctct |
284 |
Q |
| |
|
|||||||||| ||||| ||||| | |||||||| | ||| ||||||||||| ||| || ||||| ||||||||||||||||||| ||||||||||| |
|
|
| T |
11902616 |
tggaaaaccaacggaacaaagtcattgaaacaaggtcgacaaaattgttgttgtggaatggtgagaaatccttcagcagtccagagttcaattaatctct |
11902715 |
T |
|
| Q |
285 |
ctgcatcaatcaaataatcttctggaaacaatgaacaatatgcaaagcataactt |
339 |
Q |
| |
|
| |||||||||||||||||| |||||||||||||||||||||||| |||||||| |
|
|
| T |
11902716 |
cagcatcaatcaaataatctcttggaaacaatgaacaatatgcaaaacataactt |
11902770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 254 - 333
Target Start/End: Complemental strand, 11731508 - 11731429
Alignment:
| Q |
254 |
ccttcagcagtccagagttgaattaatctctctgcatcaatcaaataatcttctggaaacaatgaacaatatgcaaagca |
333 |
Q |
| |
|
||||||||| ||| ||||||||||||||||| ||||||||||||| || ||||||||||||||||||| |||||||||| |
|
|
| T |
11731508 |
ccttcagcaaaccaaagttgaattaatctctcggcatcaatcaaatgatgttctggaaacaatgaacaaaatgcaaagca |
11731429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 249 - 343
Target Start/End: Original strand, 11974974 - 11975068
Alignment:
| Q |
249 |
gaaacccttcagcagtccagagttgaattaatctctctgcatcaatcaaataatcttctggaaacaatgaacaatatgcaaagcataacttctga |
343 |
Q |
| |
|
|||| ||||| || ||| |||| |||||||||||||| |||||||||||| ||||| ||||||||||||||| || |||| || ||||||||| |
|
|
| T |
11974974 |
gaaatccttctgctgtcaagagatgaattaatctctcgacatcaatcaaatgatcttgaggaaacaatgaacaaaattcaaaacaaaacttctga |
11975068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 188 - 240
Target Start/End: Complemental strand, 12038679 - 12038627
Alignment:
| Q |
188 |
aaaaccagaggaacgaagtcttcgaaacaagcttgaccaaattgttgttctgg |
240 |
Q |
| |
|
||||||| |||||| ||||| | |||||||||| ||||||||||||||||||| |
|
|
| T |
12038679 |
aaaaccaaaggaacaaagtcgttgaaacaagctcgaccaaattgttgttctgg |
12038627 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 124
Target Start/End: Original strand, 11902539 - 11902573
Alignment:
| Q |
90 |
ttgcgagtttatgcatcaaccgattcattctatat |
124 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||| |
|
|
| T |
11902539 |
ttgcgagtttatgcattaaccgattcattctatat |
11902573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University