View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10115_high_3 (Length: 435)
Name: NF10115_high_3
Description: NF10115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10115_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 1 - 417
Target Start/End: Complemental strand, 12673437 - 12673023
Alignment:
| Q |
1 |
atgaaattcgttcaaaaaggtccagcggtgcagcttgctgccgcttaccttctattcatgcgtaagaaatgcttgatatatataatnnnnnnnntagtag |
100 |
Q |
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| T |
12673437 |
atgaaattcgtttaaaaaggtctagcggtgcagtttgctgccgcttaccttctattcatgcgtaagaaatacttgatatatataataaaaaaa--aatag |
12673340 |
T |
|
| Q |
101 |
tagtagtatttaattatggagttagcaagccaaggaattggggagggtgtgaatttgtaatatttgtttgaccatataacattgaagactgtgtgatggt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
12673339 |
tagtagtatttaattatggagttagcaagccaaggaattggggagggtgtgaatttgtaatatttgtttgaccatgtaacattgaagactgtgtgatggt |
12673240 |
T |
|
| Q |
201 |
tggtagtaagatttcccatgagcatcatagttaaaaaatttaccctacnnnnnnnccacgagtatttagaagtatcacctatagtttagcatattttctt |
300 |
Q |
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| T |
12673239 |
tggtagtaagatttcccatgagcatcatagttaaaaaatttaccctactttttttccacgagtatttagaagtatcacctatagtttagcatattttctt |
12673140 |
T |
|
| Q |
301 |
tcggttaccaaagattccttgttcccttcacccatcattttgcgcaaattcacgttcttttgttccctcttttaaggggtaaactcattggtgtagcttc |
400 |
Q |
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| T |
12673139 |
tcggttaccaaagattccttgttcccttcacccatcattttgcgcaaattcacgttcttttgttccctcttttaaggggtaaactcattggtgtagcttc |
12673040 |
T |
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| Q |
401 |
aattctaagtgagttcc |
417 |
Q |
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| T |
12673039 |
aattctaagtgagttcc |
12673023 |
T |
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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 38815202 - 38815140
Alignment:
| Q |
24 |
agcggtgcagcttgctgcc-gcttaccttctattcatgcgtaagaaatgcttgatatatataa |
85 |
Q |
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||||| |||||||| |||| |||| ||||||||||||| ||||| ||| |||||||||||||| |
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| T |
38815202 |
agcggcgcagcttgttgcccgcttgccttctattcatgtgtaagcaatccttgatatatataa |
38815140 |
T |
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