View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10115_high_5 (Length: 376)
Name: NF10115_high_5
Description: NF10115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10115_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 346; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 358
Target Start/End: Complemental strand, 40989895 - 40989538
Alignment:
| Q |
1 |
tgatccaaagggagtactttgtcaagtagcaggacctcgctcatgctcacaactgttggattccagaaaagaaaatgcttattgaggctccaaagctttt |
100 |
Q |
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| T |
40989895 |
tgatccaaagggagtactttgtcaagtatcaggacctcgctcatgctcacaactgttggattccagaaaagcaaatgcttattgaggctccaaagctttt |
40989796 |
T |
|
| Q |
101 |
gaaaaagtataagaatagaaaacaggttcagtcactgttcatagttttacacggataaacattaaagtgaacagggaaaaatttaagggaggttgaatta |
200 |
Q |
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| T |
40989795 |
gaaaaagtataagaatagaaaacaggttcagtcactgttcatagttttacacggataaacattaaagtgaacagggaaaaatttaagggaggttgaatta |
40989696 |
T |
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| Q |
201 |
aattttcttaaccatgaaaatgagataggacatcaatacgggtcttatcaggttattgtatatataaatgatttcaaaaagatttttaaaaaagttagct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40989695 |
aattttcttaaccatgaaaatgagataggacatcaataagggtcttatcaggttattgtatatataaatgatttcaaaaagatttttaaaaaagttagct |
40989596 |
T |
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| Q |
301 |
aagatgaattggcttcaacctccaagttaaatgaaattataccctaactccgttatct |
358 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40989595 |
aagatgaattggcttcaacctccaagttaaatgaaattataccctaactccgttatct |
40989538 |
T |
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