View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10115_high_6 (Length: 315)
Name: NF10115_high_6
Description: NF10115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10115_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 134; Significance: 9e-70; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 19 - 164
Target Start/End: Complemental strand, 331321 - 331176
Alignment:
| Q |
19 |
gttggaacttggaactcaactgagttggcaatgcaatctactcttatatagaccccgcaattctctcaaaccttcccattgtttcttatatatagttatt |
118 |
Q |
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| T |
331321 |
gttggaacttggaactcaactgagttggcaatgcaatctactcatatatagaccccgcaattctctcaaaccttcccattgtttcttatatatagttatt |
331222 |
T |
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| Q |
119 |
tttctataaaaatttcaatattttatttctcaaatcaagtcctttg |
164 |
Q |
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| T |
331221 |
tttctataccaatttcaatattttatttctcaaatcaagtcctttg |
331176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 194 - 304
Target Start/End: Complemental strand, 331146 - 331036
Alignment:
| Q |
194 |
tagtcattgtaaccaaactattaaactcaaatgattaatgagcttcaccaaataatgaattgttcgggagaatcttagttcgattcttgggagtaacaat |
293 |
Q |
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| T |
331146 |
tagtcattgtaaccaaactattaaactcaaatgattaatgagcttcaccaaataatgaattgttcgagagaatcttagttcgattcttgggagtaacaat |
331047 |
T |
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| Q |
294 |
tataagttctt |
304 |
Q |
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|||| |||||| |
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| T |
331046 |
tataggttctt |
331036 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 266
Target Start/End: Original strand, 17092851 - 17092892
Alignment:
| Q |
225 |
tgattaatgagcttcaccaaataatgaattgttcgggagaat |
266 |
Q |
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| T |
17092851 |
tgattaatgatcttcaccaaatgatgaattgttcggaagaat |
17092892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 203 - 267
Target Start/End: Original strand, 1757630 - 1757694
Alignment:
| Q |
203 |
taaccaaactattaaactcaaatgattaatgagcttcaccaaataatgaattgttcgggagaatc |
267 |
Q |
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| T |
1757630 |
taaccaaacaattatattcaattgattaatgagtttcacaaaataataaattattcaggagaatc |
1757694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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