View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10115_high_7 (Length: 304)
Name: NF10115_high_7
Description: NF10115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10115_high_7 |
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| [»] scaffold0024 (2 HSPs) |
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Alignment Details
Target: scaffold0024 (Bit Score: 170; Significance: 3e-91; HSPs: 2)
Name: scaffold0024
Description:
Target: scaffold0024; HSP #1
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 6 - 280
Target Start/End: Original strand, 30427 - 30700
Alignment:
| Q |
6 |
gaaacaatagtcactttgatagtggaaatggtttcgccttcacaaatagcgctttctaattatgtaattttttcttatcttatcatctctaattagcttc |
105 |
Q |
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| T |
30427 |
gaaacaacagtcactttcatagtggaaatgatttcaccttcacaaatagcgctttctaattatgtacttttttcttatcttatcatctctaattagcttc |
30526 |
T |
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| Q |
106 |
cattgaattacataacgccataaaggtgttagctta--gtgataagagtttaacgacaaagttctctcagggtcggctgtaaaatagtcattagtgtttt |
203 |
Q |
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| T |
30527 |
cattgaattacataatgccat-aaggtgttagcttaacgtcataa-cctcaagagataaagttctctcagggtcgattgtaaaatagtcattagtgtttt |
30624 |
T |
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| Q |
204 |
tctactaataatagttatgactagtttatgctgaaatatctatttattggtttgtggtcaggtgtcctgtggaggta |
280 |
Q |
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| T |
30625 |
tttactaataatagttatgactag-ttatgctgaaatatctatttattggtttgtggtcaggtgtcttgtggaggta |
30700 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0024; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 65652 - 65704
Alignment:
| Q |
1 |
gttatgaaacaatagtcactttgatagtggaaatggtttcgccttcacaaata |
53 |
Q |
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| T |
65652 |
gttatgaaacaatagtcactttgatagtggaaatggtttcgccttcacaaata |
65704 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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