View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10115_low_10 (Length: 278)
Name: NF10115_low_10
Description: NF10115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10115_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 11 - 251
Target Start/End: Original strand, 47709477 - 47709713
Alignment:
| Q |
11 |
gagcagagaaaactgataaacccaatacaagatgtgcaaggtgacctagaaagatatgatataggagagaaaactccaaacaaaacaagcaactgctaga |
110 |
Q |
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| T |
47709477 |
gagcagagaaaactgataaacccaatacaagatgtgcaaggtgacctagaaagatatgatataggagagaaaactccaaacaaaacaagcaactgctaga |
47709576 |
T |
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| Q |
111 |
acagcagtgtgcaaggctgttgtgttggatggatccacagtcattgacaattcagaatatctttgaacaatatctacaacaagaaaatagcataccagaa |
210 |
Q |
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| T |
47709577 |
acagcagtttgcaaggctgttgtgttggatgga-------tcattgacaattcagaatatctttgaacaatatctacaacaagaaaatagcataccagaa |
47709669 |
T |
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| Q |
211 |
agtc---taataatacatcaatagcagtcaatgtctttgaacaa |
251 |
Q |
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| T |
47709670 |
agtctaataataatacatcaatagcagtcaatgtctttgaacaa |
47709713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 23033286 - 23033342
Alignment:
| Q |
112 |
cagcagtgtgcaaggctgttgtgttggatggatccacagtcattgacaattcagaat |
168 |
Q |
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| T |
23033286 |
cagctgtgtgtaaggcggtggtgttggatggatccacagtcattgacaattcagaat |
23033342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 120 - 165
Target Start/End: Original strand, 41066265 - 41066310
Alignment:
| Q |
120 |
tgcaaggctgttgtgttggatggatccacagtcattgacaattcag |
165 |
Q |
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| T |
41066265 |
tgcaaagctgttgtgtttgatggatccactgtcattgacaattcag |
41066310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 191 - 231
Target Start/End: Complemental strand, 18185010 - 18184970
Alignment:
| Q |
191 |
aagaaaatagcataccagaaagtctaataatacatcaatag |
231 |
Q |
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| T |
18185010 |
aagaaaatagcataccagaaagtctgataatatatcaatag |
18184970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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