View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10115_low_11 (Length: 243)
Name: NF10115_low_11
Description: NF10115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10115_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 42395654 - 42395416
Alignment:
| Q |
1 |
tttttaggatcttaaatttttgtgtttaatcaagtatatataaattcattgcagtaaaactaggtcctaaactatcagagactctgaagggtaagttgag |
100 |
Q |
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| T |
42395654 |
tttttaggatcttaaatttttgtgtttaatcaagtatatataaattcattgcagtaaaactaggtcctaaactatcagagactctgaagggtaagttgag |
42395555 |
T |
|
| Q |
101 |
tttgggtgcaaggataatacaagaaggtgggagagggaacattttcaagaatatttttggtatgcaagaaggagagaaagtgttgaaggcttcacaatgt |
200 |
Q |
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| T |
42395554 |
tttgggtgcaaggataatacaagaaggtgggagagggaacattttcaagaatatttttggtatgcaagaaggagagaaagtgttgaaggcttcacaatgt |
42395455 |
T |
|
| Q |
201 |
tacttatacacaacagctggtcctattgctggtgttctt |
239 |
Q |
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| T |
42395454 |
tacttatacacaacagctggtcctattgctggtgttctt |
42395416 |
T |
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Target: chr6 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 48 - 232
Target Start/End: Original strand, 29295916 - 29296100
Alignment:
| Q |
48 |
attgcagtaaaactaggtcctaaactatcagagactctgaagggtaagttgagtttgggtgcaaggataatacaagaaggtgggagagggaacattttca |
147 |
Q |
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| T |
29295916 |
attgcagtgaaattaggtcctaaattttctgagactttgaagggtaagttaagtttaggtgccaaaattattcaagaaggtggaagaggtaacattttca |
29296015 |
T |
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| Q |
148 |
agaatatttttggtatgcaagaaggagagaaagtgttgaaggcttcacaatgttacttatacacaacagctggtcctattgctgg |
232 |
Q |
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| T |
29296016 |
agcatatttttgggatgcaagaggaagagaaactcttgaaagcttctcagtgctatttatataccacagctggtcctattgctgg |
29296100 |
T |
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