View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10115_low_2 (Length: 460)
Name: NF10115_low_2
Description: NF10115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10115_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 115 - 452
Target Start/End: Complemental strand, 10174152 - 10173815
Alignment:
| Q |
115 |
ttgcgcatattatggctcggcatggagttgaaatgtgtacaaaggtcgagttcatttctatgatacactgtgtgcttaatctatttgtcctcattgattt |
214 |
Q |
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| T |
10174152 |
ttgcgcatattatggctcggcatggagttgaaatgtgtacaaaggtcgagttgatttctatgatagactgtgtgcttaatctatttgtcctcattgattt |
10174053 |
T |
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| Q |
215 |
ttacgaaacagtgacgaattggattagtcatcggtaagattaattcattatctctctttttctaatacattgatttaccgtttagttctttaattgttca |
314 |
Q |
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| T |
10174052 |
ttacgaaacagtaaggaattggattagtcatcggtaagattaagtcattatctctctttttctaatacattgatttactgtttagttctttaattgttca |
10173953 |
T |
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| Q |
315 |
tcaatgtcatctgttcttacgtttgttaatttatactacttgttcttccttttaatctcatgatttgacatggcttctttggtttattttgagttgcatg |
414 |
Q |
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| T |
10173952 |
tcaatgtcatctgttcttacgtttgttaatttatactacttgttcttccctttaatctcatgatttgacatggcttctttagtttattttgagttgcatg |
10173853 |
T |
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| Q |
415 |
ccttatctggagtatggaagtagaatagtgtttcatct |
452 |
Q |
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| T |
10173852 |
ccttacctggagtacggaagtagaattgtgtttcatct |
10173815 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 77 - 452
Target Start/End: Complemental strand, 1238427 - 1238050
Alignment:
| Q |
77 |
ttgttgaaaaaataatattggttttcttgttaattagattgcgcatattatggctcggcatggagttgaaatgtgtacaaaggtcgagttcatttctatg |
176 |
Q |
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| T |
1238427 |
ttgttgaaaaaataacgttggttttctcgttaattagattgcgcatattatggcacggcatggctgtgaaaggcgtacaaaggtcgagttgatttctatg |
1238328 |
T |
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| Q |
177 |
atacactgtgtgcttaatctatttgtcctcattgatttttacgaaacagtgacgaattggattagtcatcggtaagattaattcattatctctctttttc |
276 |
Q |
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| T |
1238327 |
atacaccgtgtgcttaatcgatttgtcaccattgatttttaccaaacagtgaggaattggattgatcatcggtaagattaattcattatctctc-ttttc |
1238229 |
T |
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| Q |
277 |
taatacattgatttaccgtttagttctttaattgttcatcaatgtcatctgttct----tacgtttgttaatttatactacttgttcttccttttaatct |
372 |
Q |
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| T |
1238228 |
taatcaattgatttaccgttttgttctttaattgtttattaatgtcatgtgttcttacgtacgtttgtt-atttgtactacttgttcttccttttagcat |
1238130 |
T |
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| Q |
373 |
catgatttgacatggcttctttggtttattttgagttgcatgccttatctggagtatggaagtagaata--gtgtttcatct |
452 |
Q |
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| T |
1238129 |
catgatttgacatggcttctttggtttattttgagttgca--ccttacaaggagtatggaagtagaataatgtgtttcatct |
1238050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 76 - 307
Target Start/End: Original strand, 1174286 - 1174516
Alignment:
| Q |
76 |
gttgttgaaaaaataatattggttttcttgttaattagattgcgcatattatggctcggcatggagttgaaatgtgtacaaaggtcgagttcatttctat |
175 |
Q |
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| T |
1174286 |
gttgttgaaaaaataatgtcggttttctcgttaattagattgcacatattatggctcatcacggttgtgaaaggcggtcagagttctttctgatttgtat |
1174385 |
T |
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| Q |
176 |
gatacactgtgtgcttaatctatttgtcctcattgatttttacgaaacagtgacgaattggattagtcatcggtaagattaattcattatctctcttttt |
275 |
Q |
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| T |
1174386 |
gatagaccatgtgcttaattgatttgtcaccattgatttttaccaaacagcgatgaattggatgaatcgacggtaagattaattcattatctctcttttt |
1174485 |
T |
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| Q |
276 |
ctaatacattgatttaccgtttagttctttaa |
307 |
Q |
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| T |
1174486 |
-tgatcgattgatttatcgttttgttctttaa |
1174516 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 333 - 406
Target Start/End: Complemental strand, 794648 - 794575
Alignment:
| Q |
333 |
acgtttgttaatttatactacttgttcttccttttaatctcatgatttgacatggcttctttggtttattttga |
406 |
Q |
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| T |
794648 |
acgtttgttactttgtactacttgttatttcttttagcctcatgatttgacatgacttctttggtttattttga |
794575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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