View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10115_low_5 (Length: 412)
Name: NF10115_low_5
Description: NF10115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10115_low_5 |
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Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 16 - 335
Target Start/End: Complemental strand, 1845211 - 1844907
Alignment:
| Q |
16 |
gtttcctcccaatgcattataaatctgctgatgtgggtcttattacaatctttctatttaactttgtatatttttggaatttcaaaacatattatacaag |
115 |
Q |
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| T |
1845211 |
gtttcctcccaatgcattataaatctgctgatgtgggtcttattacaatctttctattcaactttgtatatttttggaatttcaaaacatattatacaag |
1845112 |
T |
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| Q |
116 |
gacttcattatatgtattattactaagggtctagaatactatatgtcaaataagaattatatttgaggcaatctagtattataagtttataaggacttca |
215 |
Q |
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| T |
1845111 |
gacttcattatatgtattattactaagggtctagaatactat---------------tatatttgaggcaatctagtattataagtttataaggacttca |
1845027 |
T |
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| Q |
216 |
tccatttagtcaattgtattcataattatatgaggtcgtgttagcaaagttctaaattttagttgtaaaactcannnnnnncatacgaactatatggact |
315 |
Q |
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| T |
1845026 |
tccatttagtcaattgtattcataagtatatgaggtcgtgttagcaaagttctaaattttagttgtaaaactcatttttctcatacgaactatatggact |
1844927 |
T |
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| Q |
316 |
tgtattggaacaagcattca |
335 |
Q |
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| T |
1844926 |
tgtattggaacaagcattca |
1844907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 98 - 289
Target Start/End: Complemental strand, 1819708 - 1819508
Alignment:
| Q |
98 |
caaaacatattatacaaggacttcatt-atatgtattatta---ctaaggg-tctagaatactatatgtcaaataagaattatatttgaggcaatctagt |
192 |
Q |
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| T |
1819708 |
caaaacatattatacaagaatttcatttatatgtattattattactaaggggtctagaacactatatg-caaataagaattatatttgactcaatctagt |
1819610 |
T |
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| Q |
193 |
attataagtttataaggacttcatccatttagtcaattgtattcata-----attatatgaggtcgtgttagcaaagttctaaattttagttgtaaaact |
287 |
Q |
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| T |
1819609 |
actataagttcgtaaggacttcatccatttagtcaattgcattcataagtatatgatatgaggtcgtgttagcaaagttctaaattttagttgtaaaact |
1819510 |
T |
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| Q |
288 |
ca |
289 |
Q |
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|| |
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| T |
1819509 |
ca |
1819508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 16 - 104
Target Start/End: Complemental strand, 1847431 - 1847344
Alignment:
| Q |
16 |
gtttcctcccaatgcattataaatctgctgatgtgggtcttattacaatctttctatttaactttgtatatttttggaatttcaaaaca |
104 |
Q |
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| T |
1847431 |
gtttcctcccaatgcattataag-ctgccgttgtgggtcttattacaatctttctattcaactttgtatatttttggaattgcaaaaca |
1847344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 1819783 - 1819727
Alignment:
| Q |
40 |
ctgctgatgtgggtcttattacaatctttctatttaactttgtatatttttggaatt |
96 |
Q |
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|||| |||||||||| ||||||||||||| |||| ||||| |||||||||||||||| |
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| T |
1819783 |
ctgccgatgtgggtcatattacaatctttttattcaacttggtatatttttggaatt |
1819727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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