View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10115_low_6 (Length: 401)
Name: NF10115_low_6
Description: NF10115
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10115_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 171; Significance: 1e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 39492638 - 39492447
Alignment:
| Q |
19 |
gttccggtacgaggagttgatattgtgtatcctgcacttgtcattgtgaatattaattaccctacatccgtgaataaattgtgagtgatctgatcttata |
118 |
Q |
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| T |
39492638 |
gttccggtacgaggagttgatattgtgtatcctgcacttgtcattgtgaatatta----ccctgcatccgtgaataaattgtgagtgatctgatcttata |
39492543 |
T |
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| Q |
119 |
ttaccttgtgttgtttggtctggttgtgttttaacctttgttatcaatcaaatgtaaacaaaattgaagttgccaagaatgtaatccaaaatcatg |
214 |
Q |
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| T |
39492542 |
ttaccctgtgttgtttggtctggttgtgttttaacctttgttatcaatcaaatgtaaacaaaattgaagttgccaagaatgtaatccaaaatcatg |
39492447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 171; Significance: 1e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 35839622 - 35839813
Alignment:
| Q |
19 |
gttccggtacgaggagttgatattgtgtatcctgcacttgtcattgtgaatattaattaccctacatccgtgaataaattgtgagtgatctgatcttata |
118 |
Q |
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| T |
35839622 |
gttccggtacgaggagttgatattgtgtatcctgcacttgtcattgtgaatatta----ccctgcatccgtgaataaattgtgagtgatctgatcttata |
35839717 |
T |
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| Q |
119 |
ttaccttgtgttgtttggtctggttgtgttttaacctttgttatcaatcaaatgtaaacaaaattgaagttgccaagaatgtaatccaaaatcatg |
214 |
Q |
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| T |
35839718 |
ttaccctgtgttgtttggtctggttgtgttttaacctttgttatcaatcaaatgtaaacaaaattgaagttgccaagaatgtaatccaaaatcatg |
35839813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 215 - 393
Target Start/End: Complemental strand, 47709946 - 47709768
Alignment:
| Q |
215 |
gagtttgaggttagtgtggagaagagaaaaaataaagtatatttcacttcagtcaaggttggcatcagcttggaactcactataaactcattttaccatg |
314 |
Q |
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| T |
47709946 |
gagtttgaggttagtgtggagaagagaaaaaataaagtatatttcacttcactcaaggttggcatcagcttggaactcactataaactcattttaccatg |
47709847 |
T |
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| Q |
315 |
gcttttttaagttccaacatgttgattataaaagtaagctagggatagatttggagttgaaagtatgtataaactcatt |
393 |
Q |
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| T |
47709846 |
gcttttttaagttccaaaatgttgattataaaagttagctagggatagatttggagttgaaagtatgtataaactcatt |
47709768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 19 - 214
Target Start/End: Complemental strand, 47710172 - 47709981
Alignment:
| Q |
19 |
gttccggtacgaggagttgatattgtgtatcctgcacttgtcattgtgaatattaattaccctacatccgtgaataaattgtgagtgatctgatcttata |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |
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| T |
47710172 |
gttccggtacgaggagttgatattgtgtatcctgcacttgtcattgtgaatatta----ccctgcatccgtgaataaattgtgagtgatctgatcttata |
47710077 |
T |
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| Q |
119 |
ttaccttgtgttgtttggtctggttgtgttttaacctttgttatcaatcaaatgtaaacaaaattgaagttgccaagaatgtaatccaaaatcatg |
214 |
Q |
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| T |
47710076 |
ttaccctatgttgtttggtctggttgtgttttaacctttgttatcaatcaaatgtaaacaaaattgaagttgccaagaatgtaatccaaaatcatg |
47709981 |
T |
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