View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10116_high_5 (Length: 240)
Name: NF10116_high_5
Description: NF10116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10116_high_5 |
 | |
|
| [»] chr5 (10 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 115; Significance: 2e-58; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 66 - 240
Target Start/End: Complemental strand, 13884201 - 13884027
Alignment:
| Q |
66 |
atcgacagttcaaaagtgaaagagaagagggtgagttatctccaaatggaaactttgaagaggacaattttgcagtttatggagatgctggtttggatcc |
165 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| | |
|
|
| T |
13884201 |
atcgacagttcaaaagtaaaagagaagagtgtgagttatctccaaatggaaactttgaagaggttaatttttcagtttatggagatgctggtttggatgc |
13884102 |
T |
|
| Q |
166 |
agtgcataaagaaaaggctggtggtgtgaatcagctacatcaaaatagacctggggaagaagtttgtggtgaagc |
240 |
Q |
| |
|
||||| ||||||||||| || | ||||||||| | | |||||||||||||||||||||||| |||||||||||| |
|
|
| T |
13884101 |
agtgcttaaagaaaaggatgatagtgtgaatcgacaatatcaaaatagacctggggaagaagcttgtggtgaagc |
13884027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 30 - 240
Target Start/End: Complemental strand, 16024926 - 16024716
Alignment:
| Q |
30 |
gaggcactgcaatttgcatataccaagaattatcaaatcgacagttcaaaagtgaaagagaagagggtgagttatctccaaatggaaactttgaagagga |
129 |
Q |
| |
|
||||||||| | | |||| ||||||||| ||| |||| |||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
16024926 |
gaggcactgaagtgtgcagataccaagaggaatcgaatccacagttcaaaagcgaaagagaagagggtgagttatctccaaatggagactttgaagagga |
16024827 |
T |
|
| Q |
130 |
caattttgcagtttatggagatgctggtttggatccagtgcataaagaaaaggctggtggtgtgaatcagctacatcaaaatagacctggggaagaagtt |
229 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| |||||||||||| ||| | ||||||| |||| | || | |||||||||||| ||| ||||||||| |
|
|
| T |
16024826 |
taattttgcagtttatggagatgctggttcggaggcagtgcataaaggaaatgatggtggtttgaaacggcaatatcaaaatagacgtggcgaagaagtt |
16024727 |
T |
|
| Q |
230 |
tgtggtgaagc |
240 |
Q |
| |
|
||||||||||| |
|
|
| T |
16024726 |
tgtggtgaagc |
16024716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 18 - 103
Target Start/End: Complemental strand, 13871960 - 13871875
Alignment:
| Q |
18 |
ggaccatcactagaggcactgcaatttgcatataccaagaattatcaaatcgacagttcaaaagtgaaagagaagagggtgagtta |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13871960 |
ggaccatcactagaggcactgcaatttgcatataccaagaattatcaaatcgacagttcaaaagtgaaagagaagagggtgagtta |
13871875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 21 - 195
Target Start/End: Complemental strand, 13882437 - 13882268
Alignment:
| Q |
21 |
ccatcactagaggcactgcaatttgcatataccaagaattatcaaatcgacagttcaaaagtgaaagagaagagggtgagttatctccaaatggaaactt |
120 |
Q |
| |
|
||||| || ||||||||| | |||||| |||||||||| |||||||| |||||||||||| ||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
13882437 |
ccatcgctggaggcactgaagtttgcagataccaagaagaatcaaatcaacagttcaaaagccaaagagaagagggagagttatcttgaaatggaaactt |
13882338 |
T |
|
| Q |
121 |
tgaagaggacaattttgcagtttatggagatgctggtttggatccagtgcataaagaaaaggctggtggtgtgaa |
195 |
Q |
| |
|
||||||||| | |||| ||||||||||| ||||||||||||||| ||||||||||| | |||||||||||| |
|
|
| T |
13882337 |
tgaagaggatagtttttcagtttatggaaatgctggtttggatc-----cataaagaaaaagatggtggtgtgaa |
13882268 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 61 - 135
Target Start/End: Original strand, 40165856 - 40165930
Alignment:
| Q |
61 |
atcaaatcgacagttcaaaagtgaaagagaagagggtgagttatctccaaatggaaactttgaagaggacaattt |
135 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||||||||||||| ||| ||||||||||||| ||||| |
|
|
| T |
40165856 |
atcaaatcgacagttcaaaagcgaaaaagaagagggtgagttatctccaaacggagactttgaagaggataattt |
40165930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 45 - 109
Target Start/End: Original strand, 14397373 - 14397437
Alignment:
| Q |
45 |
gcatataccaagaattatcaaatcgacagttcaaaagtgaaagagaagagggtgagttatctcca |
109 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||||| |||||||||||||||| |||||||||| |
|
|
| T |
14397373 |
gcatataccaagaataatcaaatcgatagttcaaaagcgaaagagaagagggtgtgttatctcca |
14397437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 92 - 145
Target Start/End: Complemental strand, 13878695 - 13878642
Alignment:
| Q |
92 |
gagggtgagttatctccaaatggaaactttgaagaggacaattttgcagtttat |
145 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
13878695 |
gagggtgagttatctccaaatggagactttgaataggacaattttgcagtttat |
13878642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 14391089 - 14391156
Alignment:
| Q |
45 |
gcatataccaagaattatcaaatcgacagttcaaaagtgaaagagaagagggtgagttatctccaaat |
112 |
Q |
| |
|
||||||||||||||| ||||||| | |||||||||| |||||||||||||||| ||||||||||||| |
|
|
| T |
14391089 |
gcatataccaagaatagtcaaatccatagttcaaaagcgaaagagaagagggtgtgttatctccaaat |
14391156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 112
Target Start/End: Original strand, 14392833 - 14392900
Alignment:
| Q |
45 |
gcatataccaagaattatcaaatcgacagttcaaaagtgaaagagaagagggtgagttatctccaaat |
112 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||| ||||||||||||| |||| |||||||||| |
|
|
| T |
14392833 |
gcatataccaagaagaatcaaatcgatagttcaaaagcaaaagagaagagggagagtcatctccaaat |
14392900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 61 - 156
Target Start/End: Complemental strand, 13139269 - 13139181
Alignment:
| Q |
61 |
atcaaatcgacagttcaaaagtgaaagagaagagggtgagttatctccaaatggaaactttgaagaggacaattttgcagtttatggagatgctgg |
156 |
Q |
| |
|
||||||||||||||||||| | ||||||||||||| |||||||| || ||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
13139269 |
atcaaatcgacagttcaaaggcaaaagagaagagggcgagttatca-------gagactttgaagaggataattttgcagtttatggagatcctgg |
13139181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 69 - 176
Target Start/End: Complemental strand, 26202420 - 26202313
Alignment:
| Q |
69 |
gacagttcaaaagtgaaagagaagagggtgagttatctccaaatggaaactttgaagaggacaattttgcagtttatggagatgctggtttggatccagt |
168 |
Q |
| |
|
|||| |||||||||||||||||||||||||| || ||||| |||||| ||||||||||||| || ||||||||||||| | |||||||| |||| |||| |
|
|
| T |
26202420 |
gacacttcaaaagtgaaagagaagagggtgaattgtctcctaatggagactttgaagaggataactttgcagtttatgcaaatgctggtctggaggcagt |
26202321 |
T |
|
| Q |
169 |
gcataaag |
176 |
Q |
| |
|
|||||||| |
|
|
| T |
26202320 |
gcataaag |
26202313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 69 - 176
Target Start/End: Complemental strand, 29625622 - 29625515
Alignment:
| Q |
69 |
gacagttcaaaagtgaaagagaagagggtgagttatctccaaatggaaactttgaagaggacaattttgcagtttatggagatgctggtttggatccagt |
168 |
Q |
| |
|
|||| |||||||||||||||||||||||||| || ||||| |||||| ||||||||||||| || ||||||||||||| | || ||||| |||| |||| |
|
|
| T |
29625622 |
gacacttcaaaagtgaaagagaagagggtgaattgtctcctaatggagactttgaagaggataactttgcagtttatgcaaattctggtctggaggcagt |
29625523 |
T |
|
| Q |
169 |
gcataaag |
176 |
Q |
| |
|
|||||||| |
|
|
| T |
29625522 |
gcataaag |
29625515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University