View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10116_low_2 (Length: 362)
Name: NF10116_low_2
Description: NF10116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10116_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 36388314 - 36387947
Alignment:
| Q |
1 |
tgatgtataacttgcatatctatgtttgacactagctctttattgaagactcttaatacttgaattcacact-----------------agtaattctaa |
83 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
36388314 |
tgatgtataacttgcatatctatgtttgacactagctctttattgaagactcttaatacttgaattcacacttttatctaatttgcactagtaattctaa |
36388215 |
T |
|
| Q |
84 |
taaactattacaatttcaataattgaaatgcctatttaatcaaactttaatggttcattattgaagctattatcatggcttaatcttaactcatagtcta |
183 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36388214 |
taaactattacaatttcaataattgaaatgcctatttaatcaaactttaatggttcattattgaagctattatcatggcttaatcttaactcatagtcta |
36388115 |
T |
|
| Q |
184 |
agggctccacaaagtcacctattgatgacaagtgacaaccacaatgggttggagccattggcaatcatccaatagctggtagactttcattttcgatcct |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36388114 |
agggctccacaaagtcacctattgatgacaagtgacaaccacaatgggttggagccattggcaatcatccaatagctggtagactttcattttcgatcct |
36388015 |
T |
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| Q |
284 |
gagtggctcattaaatattcattgatagtattattcgttctacnnnnnnngttggtatttgtcttctt |
351 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
36388014 |
gagtggctcattaaatattcattgatagtattattcgttctactttttttgttggtatttgtcttctt |
36387947 |
T |
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