View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10116_low_5 (Length: 269)

Name: NF10116_low_5
Description: NF10116
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10116_low_5
NF10116_low_5
[»] chr6 (1 HSPs)
chr6 (23-255)||(19159073-19159305)


Alignment Details
Target: chr6 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 23 - 255
Target Start/End: Complemental strand, 19159305 - 19159073
Alignment:
Q  23 tccagattggcagcaatattattccgataagaacaacttctttgatcagcacagtttcgatgaatttccctatgcaagggcagtctgatcgagagatacc 122  Q
    ||||||||||||||| ||||||||||||||| | ||||||||||||||||||| |||||||||||||||||||||||||||||   ||||||||||||||    
T  19159305 tccagattggcagcagtattattccgataaggataacttctttgatcagcacaatttcgatgaatttccctatgcaagggcaggacgatcgagagatacc 19159206  T
Q  123 atggtcctacgcgatggtggttatcaggtgcataatcatacgcgttccaattatcgttcctacgggaaagagaatgtgcaccctgtggataccattgagg 222  Q
    |||||| | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  19159205 atggtcttgcgcgatggtggttatcaggtgcaaaatcatacgcgttccaattatcgttcctacgggaaagagaatatgcaccatgtggataccattgagg 19159106  T
Q  223 ctgatcacatgaaataaaggaaggtacacaggt 255  Q
     ||||||| ||||||||||||||||||||||||    
T  19159105 ttgatcacgtgaaataaaggaaggtacacaggt 19159073  T

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