View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10117_high_11 (Length: 247)
Name: NF10117_high_11
Description: NF10117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10117_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 33 - 229
Target Start/End: Complemental strand, 4673275 - 4673081
Alignment:
| Q |
33 |
cacttcttcacacttgatgtatgtgttatcgtgtttcttccactatactattccttatgaaaagagtaaagaagaggaccagggtacaaccaagcaaaag |
132 |
Q |
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| T |
4673275 |
cacttcttcacacttgatgtatgtgttatcgtgttttctccactatactattccttatgaaaagagtaaagaagaggaccaggatacaaccaagcaaaag |
4673176 |
T |
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| Q |
133 |
tggtgaaatggattgagagaaaaggaagcaaacttgtaaacaaacatttttgaaaaagacacacaatttggaagctgcatgcgtccctgcgccgtca |
229 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
4673175 |
tggtgaaatggattgagagaaaaggaagcaaacttgtaaacaaacatttgtgaaaaaga--cacaatttggaagctgcatgcgtccctgcgccgtca |
4673081 |
T |
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