View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10117_high_13 (Length: 241)

Name: NF10117_high_13
Description: NF10117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10117_high_13
NF10117_high_13
[»] chr1 (12 HSPs)
chr1 (1-104)||(13614401-13614504)
chr1 (1-104)||(20508462-20508565)
chr1 (159-223)||(13614282-13614346)
chr1 (159-223)||(20379884-20379948)
chr1 (159-223)||(13554546-13554610)
chr1 (159-219)||(13688728-13688788)
chr1 (168-223)||(19134479-19134534)
chr1 (168-223)||(20508624-20508680)
chr1 (178-219)||(13519196-13519237)
chr1 (29-79)||(16446442-16446492)
chr1 (1-43)||(13688913-13688955)
chr1 (168-221)||(13438642-13438695)
[»] scaffold0069 (2 HSPs)
scaffold0069 (159-223)||(59673-59737)
scaffold0069 (159-223)||(44578-44642)
[»] scaffold0006 (3 HSPs)
scaffold0006 (159-223)||(61519-61583)
scaffold0006 (159-223)||(177024-177088)
scaffold0006 (1-104)||(61638-61750)
[»] chr8 (1 HSPs)
chr8 (159-209)||(20766965-20767015)
[»] chr6 (1 HSPs)
chr6 (178-212)||(22271585-22271619)


Alignment Details
Target: chr1 (Bit Score: 104; Significance: 6e-52; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 13614504 - 13614401
Alignment:
Q  1 tgcaaacgaacatattcaactttatgaaagatattttcttgattcaatatccccaagacatctctgccatttattgccatttgctccagattggggccca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13614504 tgcaaacgaacatattcaactttatgaaagatattttcttgattcaatatccccaagacatctctgccatttattgccatttgctccagattggggccca 13614405  T
Q  101 actg 104  Q
    ||||    
T  13614404 actg 13614401  T

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Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 20508462 - 20508565
Alignment:
Q  1 tgcaaacgaacatattcaactttatgaaagatattttcttgattcaatatccccaagacatctctgccatttattgccatttgctccagattggggccca 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  20508462 tgcaaacgaacatattcaactttatgaaagatattttcttgattcaatatccccaagacatctctgccatttattgccatttcctctagattggggccca 20508561  T
Q  101 actg 104  Q
    ||||    
T  20508562 actg 20508565  T

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Target: chr1; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 13614346 - 13614282
Alignment:
Q  159 cggtgtaaatatggtggagtttaccttttcaatacaaaacaggggttgttggaatagcatgtcct 223  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13614346 cggtataaatatggtggagtttaccttttcaatacaaaacaggggttgttggaatagcatgtcct 13614282  T

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Target: chr1; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 20379948 - 20379884
Alignment:
Q  159 cggtgtaaatatggtggagtttaccttttcaatacaaaacaggggttgttggaatagcatgtcct 223  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  20379948 cggtgtagatatggtggggtttaccttttcaatacaaaacaggggttgttggaatagcatgtcct 20379884  T

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Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 13554610 - 13554546
Alignment:
Q  159 cggtgtaaatatggtggagtttaccttttcaatacaaaacaggggttgttggaatagcatgtcct 223  Q
    ||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  13554610 cggtgtatatatggtggggtttaccttttcaatacaaaacagtggttgttggaatagcatgtcct 13554546  T

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Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 219
Target Start/End: Complemental strand, 13688788 - 13688728
Alignment:
Q  159 cggtgtaaatatggtggagtttaccttttcaatacaaaacaggggttgttggaatagcatg 219  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  13688788 cggtgtagatatggtggggtttaccttttcaatacaaaacaggggttgttggaatagcatg 13688728  T

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Target: chr1; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 19134479 - 19134534
Alignment:
Q  168 tatggtggagtttaccttttcaatacaaaacaggggttgttggaatagcatgtcct 223  Q
    ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  19134479 tatggcggaatttaccttttcaatacaaaacaggggttgttggaatagcatgtcct 19134534  T

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Target: chr1; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 168 - 223
Target Start/End: Original strand, 20508624 - 20508680
Alignment:
Q  168 tatggtgga-gtttaccttttcaatacaaaacaggggttgttggaatagcatgtcct 223  Q
    ||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||    
T  20508624 tatggtggaagtttaccttttcaatacaaaataggggttgttggaatagcatgtcct 20508680  T

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Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 13519237 - 13519196
Alignment:
Q  178 tttaccttttcaatacaaaacaggggttgttggaatagcatg 219  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  13519237 tttaccttttcaatacaaaacaggggttgttggaatagcatg 13519196  T

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Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 16446442 - 16446492
Alignment:
Q  29 agatattttcttgattcaatatccccaagacatctctgccatttattgcca 79  Q
    ||||||||||||||||||||||||| || |||||| |||||||||||||||    
T  16446442 agatattttcttgattcaatatccctaacacatctgtgccatttattgcca 16446492  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 13688955 - 13688913
Alignment:
Q  1 tgcaaacgaacatattcaactttatgaaagatattttcttgat 43  Q
    |||||||||| | |||||||||||||||| |||||||||||||    
T  13688955 tgcaaacgaagaaattcaactttatgaaatatattttcttgat 13688913  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 221
Target Start/End: Complemental strand, 13438695 - 13438642
Alignment:
Q  168 tatggtggagtttaccttttcaatacaaaacaggggttgttggaatagcatgtc 221  Q
    ||||||||  |||||||||||||| |||||||||| ||||| ||||| ||||||    
T  13438695 tatggtgggatttaccttttcaatgcaaaacagggcttgttcgaataccatgtc 13438642  T

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Target: scaffold0069 (Bit Score: 57; Significance: 6e-24; HSPs: 2)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 59737 - 59673
Alignment:
Q  159 cggtgtaaatatggtggagtttaccttttcaatacaaaacaggggttgttggaatagcatgtcct 223  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  59737 cggtgtagatatggtggggtttaccttttcaatacaaaacaggggttgttggaatagcatgtcct 59673  T

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Target: scaffold0069; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 44642 - 44578
Alignment:
Q  159 cggtgtaaatatggtggagtttaccttttcaatacaaaacaggggttgttggaatagcatgtcct 223  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  44642 cggtgtagatatggtggggtttaccttttcaatacaaaacaggggttgttggaatagcacgtcct 44578  T

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Target: scaffold0006 (Bit Score: 53; Significance: 2e-21; HSPs: 3)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 61583 - 61519
Alignment:
Q  159 cggtgtaaatatggtggagtttaccttttcaatacaaaacaggggttgttggaatagcatgtcct 223  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||    
T  61583 cggtgtagatatggtggggtttaccttttcaatacaaaacaggggttgttggaaaagcatgtcct 61519  T

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Target: scaffold0006; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 177088 - 177024
Alignment:
Q  159 cggtgtaaatatggtggagtttaccttttcaatacaaaacaggggttgttggaatagcatgtcct 223  Q
    ||||||| ||||||||| ||||||||||||||||||||| |||||||||||| ||||||||||||    
T  177088 cggtgtatatatggtggggtttaccttttcaatacaaaataggggttgttggtatagcatgtcct 177024  T

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Target: scaffold0006; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 104
Target Start/End: Complemental strand, 61750 - 61638
Alignment:
Q  1 tgcaaacgaacatattcaactttatgaaagatattttcttg---------attcaatatccccaagacatctctgccatttattgccatttgctccagat 91  Q
    |||||||||| | |||||||||||||||| |||||||||||         ||||||||||||||| | |||  ||||||||| ||||| || |||||| |    
T  61750 tgcaaacgaagaaattcaactttatgaaatatattttcttgatgacaaccattcaatatccccaacatatccgtgccatttactgccaattcctccaggt 61651  T
Q  92 tggggcccaactg 104  Q
    |||||| ||||||    
T  61650 tggggctcaactg 61638  T

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Target: chr8 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 159 - 209
Target Start/End: Original strand, 20766965 - 20767015
Alignment:
Q  159 cggtgtaaatatggtggagtttaccttttcaatacaaaacaggggttgttg 209  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  20766965 cggtgtagatatggtggggtttaccttttcaatacaaaacaggggttgttg 20767015  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Original strand, 22271585 - 22271619
Alignment:
Q  178 tttaccttttcaatacaaaacaggggttgttggaa 212  Q
    ||||||||||||||||||||||||| |||||||||    
T  22271585 tttaccttttcaatacaaaacagggcttgttggaa 22271619  T

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