View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10117_high_14 (Length: 237)
Name: NF10117_high_14
Description: NF10117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10117_high_14 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 20 - 226
Target Start/End: Complemental strand, 9586970 - 9586764
Alignment:
| Q |
20 |
gatatcaccttgttcttgatgtcaagttgttgatgctatgttatgtcacttgtgtttgagattcaacttcaaaatatatatgattaatttttccttatgt |
119 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9586970 |
gatatcaccttattcttgatgtcaagttgttgatgctatgttatgtcacttgtgtttgagattcaacttcaaaatatatatgattaatttttccttatgt |
9586871 |
T |
|
| Q |
120 |
tatttattttatgcatgtattgttggatgtaatggttgatggaatctttaagttgaaaaatttcggttattttcaattgtttgttggtttgagttgtttc |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9586870 |
tatttattttatgcatgtattgttggatgtaatggttgatggaatctttaagttgaaaaatttcggttattttcaattgtttgttggtttgagttgtttg |
9586771 |
T |
|
| Q |
220 |
ttctctc |
226 |
Q |
| |
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||||||| |
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| T |
9586770 |
ttctctc |
9586764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 20 - 147
Target Start/End: Complemental strand, 783611 - 783484
Alignment:
| Q |
20 |
gatatcaccttgttcttgatgtcaagttgttgatgctatgttatgtcacttgtgtttgagattcaacttcaaaatatatatgattaatttttccttatgt |
119 |
Q |
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||||||||||||||||| |||||||| ||||||||||||| ||||||||||||| || | ||||||| |||| |||||||||||||||| | |||||| |
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| T |
783611 |
gatatcaccttgttcttaatgtcaagatgttgatgctatgctatgtcacttgtgcatgcggttcaactgcaaactatatatgattaatttctgtttatgt |
783512 |
T |
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| Q |
120 |
tatttattttatgcatgtattgttggat |
147 |
Q |
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| T |
783511 |
tgtttattttatgtatgtattgttggat |
783484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 20 - 144
Target Start/End: Original strand, 1438248 - 1438371
Alignment:
| Q |
20 |
gatatcaccttgttcttgatgtcaagttgttgatgctatgttatgtcacttgtgtttgagattcaacttcaaaatatatatgattaatttttccttatgt |
119 |
Q |
| |
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|||||||||||||| || |||||||| ||||||||||||| | | ||||||| | |||||||||||| ||||||| ||||| ||||||| | |||||| |
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| T |
1438248 |
gatatcaccttgtttttaatgtcaagatgttgatgctatgctgtatcacttgagcatgagattcaactgcaaaataaatatggttaatttatgtttatgt |
1438347 |
T |
|
| Q |
120 |
tatttattttatgcatgtattgttg |
144 |
Q |
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|||||||||| |||||||||||||| |
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| T |
1438348 |
tatttatttt-tgcatgtattgttg |
1438371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 185 - 222
Target Start/End: Complemental strand, 37752618 - 37752581
Alignment:
| Q |
185 |
gttattttcaattgtttgttggtttgagttgtttcttc |
222 |
Q |
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| T |
37752618 |
gttattttcaattatttgttggtttgagttgtttcttc |
37752581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 37757525 - 37757480
Alignment:
| Q |
22 |
tatcaccttgttcttgatgtcaagttgttgatgctatgttatgtca |
67 |
Q |
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| T |
37757525 |
tatcaccttgttcttaatgtcaaggtgtagatgctatgtcatgtca |
37757480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 20 - 129
Target Start/End: Original strand, 33038455 - 33038564
Alignment:
| Q |
20 |
gatatcaccttgttcttgatgtcaagttgttgatgctatgttatgtcacttgtgtttgagattcaacttcaaaatatatatgattaatttttccttatgt |
119 |
Q |
| |
|
||||||||||||||||| |||| | | ||| ||||||||| ||||||||||| ||||||| |||| ||| | ||||||| || |||||| |||| | |
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| T |
33038455 |
gatatcaccttgttcttaatgttaggatgtagatgctatgatatgtcacttgaacatgagattaaactgcaacaaatatatggtttatttttgtttattt |
33038554 |
T |
|
| Q |
120 |
tatttatttt |
129 |
Q |
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||||| |||| |
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| T |
33038555 |
tatttctttt |
33038564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 129
Target Start/End: Original strand, 33020575 - 33020683
Alignment:
| Q |
21 |
atatcaccttgttcttgatgtcaagttgttgatgctatgttatgtcacttgtgtttgagattcaacttcaaaatatatatgattaatttttccttatgtt |
120 |
Q |
| |
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|||||||||||||||| |||| | | ||| |||| |||| ||||||||||| || ||||||||| ||| | ||||||| || |||||| ||||||| |
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| T |
33020575 |
atatcaccttgttcttaatgttaggatgtagatggtatgatatgtcacttgaacctgggattcaactgcaacaaatatatgttttatttttgtttatgtt |
33020674 |
T |
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| Q |
121 |
atttatttt |
129 |
Q |
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|||| |||| |
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|
| T |
33020675 |
atttctttt |
33020683 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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