View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF10117_high_2 (Length: 514)
Name: NF10117_high_2
Description: NF10117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10117_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 451; Significance: 0; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 451; E-Value: 0
Query Start/End: Original strand, 1 - 495
Target Start/End: Original strand, 1857009 - 1857503
Alignment:
| Q |
1 |
ggctctgtcatatctacattcatatgcctcaacacccatcatccatagagatgtcaagagtgataacattctcttagatggaaccaacaccgccaaagtg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1857009 |
ggctctgtcatatctacattcatatgcctcaacacccatcatccatagagatgtcaagagtgataacattctcttagatggaaccaacaccgccaaagtg |
1857108 |
T |
|
| Q |
101 |
tcagattttggagcttcaagattggttccacttgatcaaactgaagtagccacaatggtgcaaggaactattggctacttagatccagagtatatgcaaa |
200 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1857109 |
tcggattttggagcttcaagattggttccacttgatcaaactgaaatagccacaatggtgcaaggaactattggctacttagatccagagtatatgcaaa |
1857208 |
T |
|
| Q |
201 |
caagccaattaactgaaaaaagtgatgtctatagctttggagtagttctcgtggagttgctgacgggggagaagcctttttgttttggtaggccggagga |
300 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
1857209 |
caagtcaattaactgaaaaaagtgatgtctatagctttggagtagttcttgtggagttgctgacgggggagaaacctttttgttttggtaggccggaaga |
1857308 |
T |
|
| Q |
301 |
aagaagaagtcttgctatgcattttctatcttgcttgaaaaaggataatgtatttgaagttattcaagatggtatgtggaatgaagaaaacaaacaagag |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
1857309 |
aagaagaagtcttgctatgcattttctatcttgcttgaaaaaggataatgtatttgaagttattcaagatggtttgtggaatgaagaaaacaaacaagag |
1857408 |
T |
|
| Q |
401 |
gtcatggaggtagctattcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaat |
495 |
Q |
| |
|
||| |||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1857409 |
atcaaggaggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaat |
1857503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 6 - 495
Target Start/End: Original strand, 1868612 - 1869101
Alignment:
| Q |
6 |
tgtcatatctacattcatatgcctcaacacccatcatccatagagatgtcaagagtgataacattctcttagatggaaccaacaccgccaaagtgtcaga |
105 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || || |
|
|
| T |
1868612 |
tgtcatatctacattcatatgcctcaatacccatcatccatagagatgtcaagagtgataacattctcttagatagaaccaacaccgccaaagtatcgga |
1868711 |
T |
|
| Q |
106 |
ttttggagcttcaagattggttccacttgatcaaactgaagtagccacaatggtgcaaggaactattggctacttagatccagagtatatgcaaacaagc |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1868712 |
ttttggagcttcaagattggttccacttgatcaaactgaaatagccacaatggtgcaaggaactattggctacttagatccagagtatatgcaaacaagt |
1868811 |
T |
|
| Q |
206 |
caattaactgaaaaaagtgatgtctatagctttggagtagttctcgtggagttgctgacgggggagaagcctttttgttttggtaggccggaggaaagaa |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
1868812 |
caattaactgaaaaaagtgatgtctatagctttggagtagttcttgtagagttgctgacgggggagaaacctttttgttttggtaggccggaagaaagaa |
1868911 |
T |
|
| Q |
306 |
gaagtcttgctatgcattttctatcttgcttgaaaaaggataatgtatttgaagttattcaagatggtatgtggaatgaagaaaacaaacaagaggtcat |
405 |
Q |
| |
|
|||||||||| |||||||| |||||||| |||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
1868912 |
gaagtcttgcaatgcatttactatcttgattgaaaaaagataatgtatttgaagttattcaagatggtttgtggaatgaagaaaacaaacaagagatcaa |
1869011 |
T |
|
| Q |
406 |
ggaggtagctattcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaat |
495 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1869012 |
ggaggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaat |
1869101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 6 - 495
Target Start/End: Original strand, 1843003 - 1843492
Alignment:
| Q |
6 |
tgtcatatctacattcatatgcctcaacacccatcatccatagagatgtcaagagtgataacattctcttagatggaaccaacaccgccaaagtgtcaga |
105 |
Q |
| |
|
||||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| ||||| |
|
|
| T |
1843003 |
tgtcatatctacattcatatgcctcaataccaataatccatagagatgtcaagagtgataacattctcttagatagaaccaacacagccaaagtatcaga |
1843102 |
T |
|
| Q |
106 |
ttttggagcttcaagattggttccacttgatcaaactgaagtagccacaatggtgcaaggaactattggctacttagatccagagtatatgcaaacaagc |
205 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1843103 |
ttttggagcttcaagattggttccaattgatcaaactgaaatagccacaatggtgcaaggaactattggctacttagatccagagtatatgcaaacaagt |
1843202 |
T |
|
| Q |
206 |
caattaactgaaaaaagtgatgtctatagctttggagtagttctcgtggagttgctgacgggggagaagcctttttgttttggtaggccggaggaaagaa |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||| ||||||||||||||||||||||| || |||| |
|
|
| T |
1843203 |
caattaactgaaaaaagtgatgtctatagctttggagtagttcttgtagagttgctaacgggggagaaacctttttgttttggtaggccggaagagagaa |
1843302 |
T |
|
| Q |
306 |
gaagtcttgctatgcattttctatcttgcttgaaaaaggataatgtatttgaagttattcaagatggtatgtggaatgaagaaaacaaacaagaggtcat |
405 |
Q |
| |
|
|||||||||| ||| |||| |||||||| |||||||| |||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
1843303 |
gaagtcttgcaatgaatttactatcttgattgaaaaaagataatgtgtttgaagttattcaagatggtttgtggaatgaagaaaacaaacaagagatcaa |
1843402 |
T |
|
| Q |
406 |
ggaggtagctattcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaat |
495 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1843403 |
ggaggtggctgttcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaat |
1843492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 2 - 495
Target Start/End: Complemental strand, 1816034 - 1815541
Alignment:
| Q |
2 |
gctctgtcatatctacattcatatgcctcaacacccatcatccatagagatgtcaagagtgataacattctcttagatggaaccaacaccgccaaagtgt |
101 |
Q |
| |
|
|||||||||||||| |||||| |||||||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1816034 |
gctctgtcatatctgcattcagctgcctcaatacccattatccatagagatgtcaagagtgctaacattctcttagatggaaccaacaccgctaaagtgt |
1815935 |
T |
|
| Q |
102 |
cagattttggagcttcaagattggttccacttgatcaaactgaagtagccacaatggtgcaaggaactattggctacttagatccagagtatatgcaaac |
201 |
Q |
| |
|
||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
1815934 |
cagattttggagcatcaaggttgattccacttgatcaaactgaagtagccacaatggtgcaaggaactattggctacttggatccagagtatatgcaaac |
1815835 |
T |
|
| Q |
202 |
aagccaattaactgaaaaaagtgatgtctatagctttggagtagttctcgtggagttgctgacgggggagaagcctttttgttttggtaggccggaggaa |
301 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||||||||||||| |||||| |||| ||||||||||| ||||||||||||||||||||||| || |
|
|
| T |
1815834 |
aagccaattaactgagaaaagtgatgtatatagctttggagtagttcttgtggagctgctaacgggggagaaacctttttgttttggtaggccggaagag |
1815735 |
T |
|
| Q |
302 |
agaagaagtcttgctatgcattttctatcttgcttgaaaaaggataatgtatttgaagttattcaagatggtatgtggaatgaagaaaacaaacaagagg |
401 |
Q |
| |
|
|||||||||||||||| ||| ||| ||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| | |
|
|
| T |
1815734 |
agaagaagtcttgctacgcactttttatcttgcttgaaaaaggataatgtgtttgaagttattcaagatggtttgtggaatgaagaaaacaaacaagtga |
1815635 |
T |
|
| Q |
402 |
tcatggaggtagctattcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattggagggaat |
495 |
Q |
| |
|
|||||||||| ||| ||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1815634 |
tcatggaggtggctgttcttgcggcgaactgtttgagacttataggggaggaaagaccaagcatgaaggaagtggctatggaattggagggaat |
1815541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 15 - 489
Target Start/End: Complemental strand, 9161843 - 9161369
Alignment:
| Q |
15 |
tacattcatatgcctcaacacccatcatccatagagatgtcaagagtgataacattctcttagatggaaccaacaccgccaaagtgtcagattttggagc |
114 |
Q |
| |
|
||||||||| ||| |||| ||| || |||||||||||||| |||||| |||||||||||||||| | ||| || ||||| || ||||||||||| |
|
|
| T |
9161843 |
tacattcatctgcatcaatacctattatccatagagatgttaagagtaccaacattctcttagatgacaattacaatgcaaaagtttctgattttggagc |
9161744 |
T |
|
| Q |
115 |
ttcaagattggttccacttgatcaaactgaagtagccacaatggtgcaaggaactattggctacttagatccagagtatatgcaaacaagccaattaact |
214 |
Q |
| |
|
||| || |||||||||||||||||||| || |||| |||||||| ||||||||| |||| ||||||||||| ||||||||||||||| ||| |||| |
|
|
| T |
9161743 |
ttcgaggttggttccacttgatcaaaccgagatagcaacaatggtacaaggaactcttggttacttagatccggagtatatgcaaacacatcaactaaca |
9161644 |
T |
|
| Q |
215 |
gaaaaaagtgatgtctatagctttggagtagttctcgtggagttgctgacgggggagaagcctttttgttttggtaggccggaggaaagaagaagtcttg |
314 |
Q |
| |
|
|| ||||||||||| ||||||||||| |||||||| | ||| | || ||||| || || ||| ||| |||| |||||| || || | | ||||||| |
|
|
| T |
9161643 |
gagaaaagtgatgtttatagctttggtgtagttcttgcagagcttcttacgggagacaaacctctttcttttaataggccagaagagaatatcagtcttg |
9161544 |
T |
|
| Q |
315 |
ctatgcattttctatcttgcttgaaaaaggataatgtatttgaagttattcaagatggtatgtggaatgaagaaaacaaacaagaggtcatggaggtagc |
414 |
Q |
| |
|
||||||| ||| | ||||| || ||| | |||| | ||||||| |||||||| |||||| | ||||| |||||||| | ||| | | |||||| || |
|
|
| T |
9161543 |
ctatgcactttttgtcttgtttaaaacaagatagaatttttgaagctattcaagttggtattttaaatgatgaaaacaaggaggagattaaggaggttgc |
9161444 |
T |
|
| Q |
415 |
tattcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattgga |
489 |
Q |
| |
|
||||||||| || | |||||||||||| |||||||| ||||| || ||||||||||||||||| ||||| ||||| |
|
|
| T |
9161443 |
tattcttgcagcaaggtgtttgagactaagaggggatgaaaggcctagcatgaaggaagtggcaatggagttgga |
9161369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 11 - 489
Target Start/End: Complemental strand, 9170673 - 9170195
Alignment:
| Q |
11 |
tatctacattcatatgcctcaacacccatcatccatagagatgtcaagagtgataacattctcttagatggaaccaacaccgccaaagtgtcagattttg |
110 |
Q |
| |
|
||||||||||||| ||| |||| || || |||||||||||||| |||||| ||||||||||| |||| | |||| |||||||| || || || | |
|
|
| T |
9170673 |
tatctacattcatctgcatcaattccaattatccatagagatgttaagagtaccaacattctcttggatgacaattacactgccaaagtttccgacttcg |
9170574 |
T |
|
| Q |
111 |
gagcttcaagattggttccacttgatcaaactgaagtagccacaatggtgcaaggaactattggctacttagatccagagtatatgcaaacaagccaatt |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||| || |||| ||||||||||||||||| |||| ||||||||||| ||||||||||||||| |||| |
|
|
| T |
9170573 |
gagcttcaagattggttccacttgatcaaacagagatagcaacaatggtgcaaggaacacttggatacttagatcccgagtatatgcaaacacataaatt |
9170474 |
T |
|
| Q |
211 |
aactgaaaaaagtgatgtctatagctttggagtagttctcgtggagttgctgacgggggagaagcctttttgttttggtaggccggaggaaagaagaagt |
310 |
Q |
| |
|
||| |||||||||||||| |||||||||||||||||||| | ||| | || || || || || ||| ||| |||| |||||| || || | | ||| |
|
|
| T |
9170473 |
aaccgaaaaaagtgatgtttatagctttggagtagttcttgcagagcttctaacaggtgacaaacctctttcttttaataggccagaagagaccattagt |
9170374 |
T |
|
| Q |
311 |
cttgctatgcattttctatcttgcttgaaaaaggataatgtatttgaagttattcaagatgg-tatgtggaatgaagaaaacaaacaagaggtcatggag |
409 |
Q |
| |
|
||||||||||| ||| | ||||| || ||| | ||||| | ||||||| |||||||| ||| | ||| ||| || || ||||| ||||| | | |||| |
|
|
| T |
9170373 |
cttgctatgcactttttgtcttgtttaaaacaagataaattttttgaagctattcaagttggatttgt-gaacgatgataacaagaaagagattaaggag |
9170275 |
T |
|
| Q |
410 |
gtagctattcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattgga |
489 |
Q |
| |
|
|| ||||||||||| | | |||||| |||||||||||||| |||||||| | |||||||||||||| ||||| ||||| |
|
|
| T |
9170274 |
gttgctattcttgcttcaaggtgtttaagacttagaggggatgaaagaccttgtatgaaggaagtggcaatggagttgga |
9170195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 8 - 489
Target Start/End: Complemental strand, 9218759 - 9218278
Alignment:
| Q |
8 |
tcatatctacattcatatgcctcaacacccatcatccatagagatgtcaagagtgataacattctcttagatggaaccaacaccgccaaagtgtcagatt |
107 |
Q |
| |
|
||||||||||||||| ||| |||| || || |||||||||||||| |||||| ||||||||||| |||| | |||| || ||||| || || | |
|
|
| T |
9218759 |
tcatatctacattcagctgcatcaattccaattatccatagagatgttaagagtaccaacattctcttggatgacaattacactgcaaaagtttccgact |
9218660 |
T |
|
| Q |
108 |
ttggagcttcaagattggttccacttgatcaaactgaagtagccacaatggtgcaaggaactattggctacttagatccagagtatatgcaaacaagcca |
207 |
Q |
| |
|
| |||||||||||||||||||||||||||||||| || |||| |||||||| ||||||||| |||| ||||||||||||||||||||||||||| || |
|
|
| T |
9218659 |
tcggagcttcaagattggttccacttgatcaaaccgagatagcgacaatggtacaaggaactcttggatacttagatccagagtatatgcaaacacatca |
9218560 |
T |
|
| Q |
208 |
attaactgaaaaaagtgatgtctatagctttggagtagttctcgtggagttgctgacgggggagaagcctttttgttttggtaggccggaggaaagaaga |
307 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||||||| | ||| | || || || | || ||| ||| |||| ||||| || || | | |
|
|
| T |
9218559 |
attaaccgaaaaaagtgatgtgtatagctttggagtagttcttgcagagcttctaacaggtgccaaacctctttcttttaacaggccagaagagaccatt |
9218460 |
T |
|
| Q |
308 |
agtcttgctatgcattttctatcttgcttgaaaaaggataatgtatttgaagttattcaagatggtatgtggaatgaagaaaacaaacaagaggtcatgg |
407 |
Q |
| |
|
|||||||||||||| ||| | ||||| || ||| | ||||| | ||||| | |||||||| ||| || | ||||| |||||||| ||||| | | || |
|
|
| T |
9218459 |
agtcttgctatgcactttttgtcttgtttaaaacaagataaactttttgatgctattcaagttggaattttcaatgatgaaaacaagaaagagattaagg |
9218360 |
T |
|
| Q |
408 |
aggtagctattcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattgga |
489 |
Q |
| |
|
|||| |||||||||| || | |||||| ||||||||||| || |||||||| || |||| |||||| |||||||| ||||| |
|
|
| T |
9218359 |
aggtttctattcttgctgcaaggtgtttaagacttagaggtgatgaaagacctagtatgagggaagtagctatggagttgga |
9218278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 8 - 483
Target Start/End: Complemental strand, 9229644 - 9229169
Alignment:
| Q |
8 |
tcatatctacattcatatgcctcaacacccatcatccatagagatgtcaagagtgataacattctcttagatggaaccaacaccgccaaagtgtcagatt |
107 |
Q |
| |
|
|||||||||||||||| ||| || ||| || ||||||||||||||||| |||| ||||||||||| |||| | |||| || |||||||| |||| |
|
|
| T |
9229644 |
tcatatctacattcatctgcatccttaccaattatccatagagatgtcaaaagtgccaacattctcttggatgacaattacactgcaaaagtgtctgatt |
9229545 |
T |
|
| Q |
108 |
ttggagcttcaagattggttccacttgatcaaactgaagtagccacaatggtgcaaggaactattggctacttagatccagagtatatgcaaacaagcca |
207 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||| ||||||| |||| ||||||||| ||||||| ||||||||||| |||||||||||| ||| |
|
|
| T |
9229544 |
ttggtgcttcaagattggttccacttgatcatactatgatagccactgtggtacaaggaactcttggctatttagatccagaatatatgcaaacacacca |
9229445 |
T |
|
| Q |
208 |
attaactgaaaaaagtgatgtctatagctttggagtagttctcgtggagttgctgacgggggagaagcctttttgttttggtaggccggaggaaagaaga |
307 |
Q |
| |
|
| |||| || ||||||||||| |||||||| || ||||| || | ||| | || ||||||||||| ||| ||| |||| ||| || || |||| ||| |
|
|
| T |
9229444 |
actaacagagaaaagtgatgtttatagcttcggggtagtactggcagagctcctaacgggggagaaacctatttcttttaatagaccagaagaaaacaga |
9229345 |
T |
|
| Q |
308 |
agtcttgctatgcattttctatcttgcttgaaaaaggataatgtatttgaagttattcaagatggtatgtggaatgaagaaaacaaacaagaggtcatgg |
407 |
Q |
| |
|
|| ||||| || || || ||||||| || | | || || |||| | ||||||| |||||| |||||| | |||||| || ||||| | ||| | | || |
|
|
| T |
9229344 |
agccttgcaattcacttcttatcttgtttaagagagaatcatgtgtctgaagttcttcaagttggtattttgaatgatgagaacaaggaggagattaagg |
9229245 |
T |
|
| Q |
408 |
aggtagctattcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatgga |
483 |
Q |
| |
|
| || ||||||||||| || | ||| |||||||||| ||| || |||||||| |||||||| |||||||||||||| |
|
|
| T |
9229244 |
aagttgctattcttgctgcaaggtgcttgagacttaaaggcgaggaaagacctagcatgaaagaagtggctatgga |
9229169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 98; E-Value: 5e-48
Query Start/End: Original strand, 8 - 489
Target Start/End: Complemental strand, 9200243 - 9199762
Alignment:
| Q |
8 |
tcatatctacattcatatgcctcaacacccatcatccatagagatgtcaagagtgataacattctcttagatggaaccaacaccgccaaagtgtcagatt |
107 |
Q |
| |
|
||||||||||||||| ||| |||| || || ||||| |||||||| |||||| ||||||||||| |||| | ||||||| ||||| || || | |
|
|
| T |
9200243 |
tcatatctacattcagctgcatcaattccaattatccacagagatgttaagagtaccaacattctcttggatgacaattacaccgcaaaagtttctgact |
9200144 |
T |
|
| Q |
108 |
ttggagcttcaagattggttccacttgatcaaactgaagtagccacaatggtgcaaggaactattggctacttagatccagagtatatgcaaacaagcca |
207 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| || |||| ||||||||||||||||| |||| ||||||||||| ||||||||||||||| || |
|
|
| T |
9200143 |
ttggagcttccagattggttccacttgatcaaacagagatagcaacaatggtgcaaggaacacttggatacttagatcccgagtatatgcaaacacatca |
9200044 |
T |
|
| Q |
208 |
attaactgaaaaaagtgatgtctatagctttggagtagttctcgtggagttgctgacgggggagaagcctttttgttttggtaggccggaggaaagaaga |
307 |
Q |
| |
|
| |||| || ||||||||||| |||||||||||||| ||||| | ||| | || || || || || ||| ||| |||| |||| || |||| | |
|
|
| T |
9200043 |
actaaccgagaaaagtgatgtttatagctttggagtggttcttgcagagcttctaacaggtgacaaacctctttcttttaacaggcaagaagaaaccatt |
9199944 |
T |
|
| Q |
308 |
agtcttgctatgcattttctatcttgcttgaaaaaggataatgtatttgaagttattcaagatggtatgtggaatgaagaaaacaaacaagaggtcatgg |
407 |
Q |
| |
|
|||||||||||||| ||| | ||||| || ||| | ||||| | ||||| | |||||||| ||| || | | |||| |||||||| ||||| | | || |
|
|
| T |
9199943 |
agtcttgctatgcactttttgtcttgtttaaaacaagataaactttttgatgctattcaagttggaattttggatgatgaaaacaagaaagagattaagg |
9199844 |
T |
|
| Q |
408 |
aggtagctattcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattgga |
489 |
Q |
| |
|
|||| ||||||||||| || | |||||| ||||||||||| || |||||||| || |||| |||||| |||||||| ||||| |
|
|
| T |
9199843 |
aggttgctattcttgctgcaaggtgtttaagacttagaggtgatgaaagacctagtatgagggaagtagctatggagttgga |
9199762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 11 - 246
Target Start/End: Complemental strand, 9155935 - 9155700
Alignment:
| Q |
11 |
tatctacattcatatgcctcaacacccatcatccatagagatgtcaagagtgataacattctcttagatggaaccaacaccgccaaagtgtcagattttg |
110 |
Q |
| |
|
||||||||||||| ||| |||| ||| || ||||||||||||||||| ||| ||||||||||| |||| | |||| || ||||| || ||||||| |
|
|
| T |
9155935 |
tatctacattcatctgcatcaataccgattatccatagagatgtcaaaagtaccaacattctcttggatgacaattacacagcgaaagtttccgattttg |
9155836 |
T |
|
| Q |
111 |
gagcttcaagattggttccacttgatcaaactgaagtagccacaatggtgcaaggaactattggctacttagatccagagtatatgcaaacaagccaatt |
210 |
Q |
| |
|
||||||| || || ||||||||||||||||| || |||| |||||||| ||||||||| |||| ||| |||||||||||||||||||||| ||||| |
|
|
| T |
9155835 |
gagcttcgaggttagttccacttgatcaaaccgagatagcaacaatggttcaaggaactcttggatacctagatccagagtatatgcaaactcatcaatt |
9155736 |
T |
|
| Q |
211 |
aactgaaaaaagtgatgtctatagctttggagtagt |
246 |
Q |
| |
|
||| || ||||||||||||||||||||||||||||| |
|
|
| T |
9155735 |
aaccgagaaaagtgatgtctatagctttggagtagt |
9155700 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 11 - 489
Target Start/End: Original strand, 9118605 - 9119083
Alignment:
| Q |
11 |
tatctacattcatatgcctcaacacccatcatccatagagatgtcaagagtgataacattctcttagatggaaccaacaccgccaaagtgtcagattttg |
110 |
Q |
| |
|
||||||||||||| ||| ||| || || |||||||||||||| |||||| ||||||||||| |||| | |||| || ||||| || ||||| | |
|
|
| T |
9118605 |
tatctacattcatctgcatcatttccaattatccatagagatgttaagagtaccaacattctcttggatgacaattacactgcaaaagtttccgatttcg |
9118704 |
T |
|
| Q |
111 |
gagcttcaagattggttccacttgatcaaactgaagtagccacaatggtgcaaggaactattggctacttagatccagagtatatgcaaacaagccaatt |
210 |
Q |
| |
|
||||||| | ||||||||||||||||||||| || |||| ||| |||| |||||||| |||| |||||||| |||||||| |||||||| ||||| |
|
|
| T |
9118705 |
gagcttccaaattggttccacttgatcaaaccgagatagcaacagtggtacaaggaacacttggatacttagacccagagtacatgcaaacgcatcaatt |
9118804 |
T |
|
| Q |
211 |
aactgaaaaaagtgatgtctatagctttggagtagttctcgtggagttgctgacgggggagaagcctttttgttttggtaggccggaggaaagaagaagt |
310 |
Q |
| |
|
||| || ||||||||||| |||||||||||||||||||| | ||| | || || || || || ||| || |||| ||||| || || | | ||| |
|
|
| T |
9118805 |
aaccgagaaaagtgatgtttatagctttggagtagttcttgcagagcttctaacaggtgacaaacctcttgattttaacaggccagaagagaccattagt |
9118904 |
T |
|
| Q |
311 |
cttgctatgcattttctatcttgcttgaaaaaggataatgtatttgaagttattcaagatggtatgtggaatgaagaaaacaaacaagaggtcatggagg |
410 |
Q |
| |
|
||||||||||| || | ||||| || ||| | ||||| | ||||||| |||||||| ||| || | |||||| || ||||| ||||| | | ||||| |
|
|
| T |
9118905 |
cttgctatgcacttcttgtcttgtttaaaacaagataaactttttgaagctattcaagttggaattttgaatgatgataacaaggaagagattaaggagg |
9119004 |
T |
|
| Q |
411 |
tagctattcttgcggcgaagtgtttgagacttagaggggaagaaagaccaagcatgaaggaagtggctatggaattgga |
489 |
Q |
| |
|
| ||||||||||| || | ||||||||||||| |||| || |||||||| || ||||||||| | |||||||| ||||| |
|
|
| T |
9119005 |
ttgctattcttgcagcaaggtgtttgagacttcgaggagaggaaagacctagtatgaaggaaatagctatggagttgga |
9119083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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