View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10117_high_4 (Length: 354)
Name: NF10117_high_4
Description: NF10117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10117_high_4 |
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Alignment Details
Target: chr5 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 12 - 334
Target Start/End: Complemental strand, 4672730 - 4672414
Alignment:
| Q |
12 |
aattgaatagtggcttatgcaacttgcaatataatcacgggggtacaatatcatgattagtttagtttctttgtatgttactaaagaatgggacttgagt |
111 |
Q |
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| T |
4672730 |
aattgaatagtggcttatgcaacttgcaatgtaatcacgggggtacaatatcatgattagtttagtttctttgtatgttactaaagaatgggacttgagt |
4672631 |
T |
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| Q |
112 |
catctttcccacccttacagttacatcctcttcggtcaaatataagttgttggactaattaaagggttaagtgagtttatatccatcttgaggttttagt |
211 |
Q |
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| T |
4672630 |
catctttcccacccttaca------tcctcttcggtcaaatataagttgttggactaattaaagggttaagtgagtttatatccatcttgaggttttagt |
4672537 |
T |
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| Q |
212 |
ccttttaaatttatttttaaaacgatgatttctaaatattttccgtcaaccaaagtgattatcgttattaaaggctgcacatgtgcgttgtatgtatagg |
311 |
Q |
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||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4672536 |
ccttttaaatttatttttaaaacaatgatttctaaatattttccgtcaaacaaagtgattatcgttattaaaggctgcacatgtgcgttgtatgtatagg |
4672437 |
T |
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| Q |
312 |
agactacgaacaaaagatcatat |
334 |
Q |
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||||||||||||||||||||||| |
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| T |
4672436 |
agactacgaacaaaagatcatat |
4672414 |
T |
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