View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10117_high_5 (Length: 339)
Name: NF10117_high_5
Description: NF10117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10117_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 199; Significance: 1e-108; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 9586795 - 9586597
Alignment:
| Q |
1 |
attgtttgttggtttgagttgtttgttctctcgtcgtacattactttttaaattttaaatagttggatcatcgcattagagggtttgtcatttgattttt |
100 |
Q |
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| T |
9586795 |
attgtttgttggtttgagttgtttgttctctcgtcgtacattactttttaaattttaaatagttggatcatcgcattagagggtttgtcatttgattttt |
9586696 |
T |
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| Q |
101 |
taagatttgagttacgatttagatgataaaatgttcttaatgcggcaacaatttcttaatgtctgaaaacataaaagatagaacaatatggtagttgtt |
199 |
Q |
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| T |
9586695 |
taagatttgagttacgatttagatgataaaatgttcttaatgcggcaacaatttcttaatgtctgaaaacataaaagatagaacaatatggtagttgtt |
9586597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 82 - 125
Target Start/End: Original strand, 2502591 - 2502634
Alignment:
| Q |
82 |
ggtttgtcatttgattttttaagatttgagttacgatttagatg |
125 |
Q |
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| T |
2502591 |
ggtttgtcatttgattttctaagatttgcgttatgatttagatg |
2502634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 114
Target Start/End: Original strand, 33027142 - 33027183
Alignment:
| Q |
73 |
gcattagagggtttgtcatttgattttttaagatttgagtta |
114 |
Q |
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| T |
33027142 |
gcattagatggtttgtcatttgattttctaaaatttgagtta |
33027183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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