View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10117_high_8 (Length: 312)

Name: NF10117_high_8
Description: NF10117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10117_high_8
NF10117_high_8
[»] chr1 (11 HSPs)
chr1 (13-312)||(1856700-1856999)
chr1 (13-306)||(1816051-1816344)
chr1 (20-312)||(1868302-1868597)
chr1 (20-312)||(1842693-1842988)
chr1 (107-242)||(9170766-9170901)
chr1 (17-242)||(9200333-9200558)
chr1 (67-231)||(9218860-9219024)
chr1 (59-242)||(9118329-9118512)
chr1 (107-242)||(9161940-9162075)
chr1 (122-242)||(9156028-9156148)
chr1 (116-242)||(9229734-9229860)
[»] chr7 (3 HSPs)
chr7 (13-180)||(37567642-37567809)
chr7 (175-302)||(37572119-37572246)
chr7 (155-199)||(30105892-30105936)
[»] chr3 (1 HSPs)
chr3 (158-237)||(40597787-40597866)


Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 13 - 312
Target Start/End: Original strand, 1856700 - 1856999
Alignment:
Q  13 cataggtaaaggaggttttggtacagtttacaaaggggaacttgatgataatagaattgttgctatcaaaaagtctaaaacaatagacaaaagccaaatt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1856700 cataggtaaaggaggttttggtacagtttacaaaggggaacttgatgataatagaattgttgctatcaaaaagtctaaaacaatagacaaaagccaaatt 1856799  T
Q  113 gaacaattcattaatgaggtggatgttgtctctcaaataaatcacaggaatgtggtcaaactcttagggtgttgtctagaaacagaagttcctttgttgg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1856800 gaacaattcattaatgaggtggatgttgtctctcaaataaatcacagaaatgtggtcaaactcttagggtgttgtctagaaacagaagttcctttgttgg 1856899  T
Q  213 tttatgagtttgttagcaatggtactctttctgaatttattcacacaaaaggtaagacgaatgatccaacttggaagactcgtcttaagatagccgcaga 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1856900 tttatgagtttgttagcaatggtactctttctgaatttattcacacaaaaggtaagacgaatgatccaacttggaagactcgtcttaagatagccgcaga 1856999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 306
Target Start/End: Complemental strand, 1816344 - 1816051
Alignment:
Q  13 cataggtaaaggaggttttggtacagtttacaaaggggaacttgatgataatagaattgttgctatcaaaaagtctaaaacaatagacaaaagccaaatt 112  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||    
T  1816344 cataggtagaggaggttttggtacagttttcaaaggggaacttgatgataatagaattgtggctatcaaaaagtccaaaacaatagacgaaagccaaatt 1816245  T
Q  113 gaacaattcattaatgaggtggatgttgtctctcaaataaatcacaggaatgtggtcaaactcttagggtgttgtctagaaacagaagttcctttgttgg 212  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  1816244 gaacaattcattaacgaggtggatgttgtctctcaaataaatcacaggaatgtggtcaaactcttggggtgttgtctagaaacagaagttcctttgttgg 1816145  T
Q  213 tttatgagtttgttagcaatggtactctttctgaatttattcacacaaaaggtaagacgaatgatccaacttggaagactcgtcttaagatagc 306  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||| ||||  |||||||| |||||||||| ||||||    
T  1816144 tttatgagtttgttagcaatggtactctttctgaatttcttcgcacacaaggtaagacgaacgatcttacttggaaaactcgtcttaggatagc 1816051  T

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Target: chr1; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 20 - 312
Target Start/End: Original strand, 1868302 - 1868597
Alignment:
Q  20 aaaggaggttttggtacagtttacaaaggggaacttgatgataatagaattgttgctatcaaaaagtctaaaacaatagacaaaagccaaattgaacaat 119  Q
    ||||| ||||||||||| |||| ||||||    || |||||||| ||||| |||||||||||||| || |||| |||||| | ||||||||| || ||||    
T  1868302 aaaggtggttttggtaccgttttcaaaggacttctagatgataaaagaatcgttgctatcaaaaaatcaaaaataatagatagaagccaaatcgatcaat 1868401  T
Q  120 tcattaatgaggtggatgttgtctctcaaataaatcacaggaatgtggtcaaactcttagggtgttgtctagaaacagaagttcctttgttggtttatga 219  Q
    ||||||||||||||| |||| |||||||||||||||| |||||||| ||||||||||| ||||||||| |||| ||||||||||||||||||||||||||    
T  1868402 tcattaatgaggtggttgttctctctcaaataaatcataggaatgttgtcaaactcttggggtgttgtttagagacagaagttcctttgttggtttatga 1868501  T
Q  220 gtttgttagcaatggtactctttctgaatttattcacacaaaagg---taagacgaatgatccaacttggaagactcgtcttaagatagccgcaga 312  Q
     ||||||| |||||| || |||||||  ||||| |||||| || |   ||||  |||| ||  ||| ||||| |||||||||||||||||||||||    
T  1868502 atttgttaccaatggcaccctttctggttttatacacacacaaagtaataaggtgaataatgaaacatggaaaactcgtcttaagatagccgcaga 1868597  T

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Target: chr1; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 20 - 312
Target Start/End: Original strand, 1842693 - 1842988
Alignment:
Q  20 aaaggaggttttggtacagtttacaaaggggaacttgatgataatagaattgttgctatcaaaaagtctaaaacaatagacaaaagccaaattgaacaat 119  Q
    ||||| ||||||||||| |||||||||||    || |||||||| ||||| |||||||||||||| || |||| |||||| | |||||||||  | ||||    
T  1842693 aaaggtggttttggtactgtttacaaaggatttctagatgataaaagaatcgttgctatcaaaaaatcaaaaataatagatagaagccaaatcaatcaat 1842792  T
Q  120 tcattaatgaggtggatgttgtctctcaaataaatcacaggaatgtggtcaaactcttagggtgttgtctagaaacagaagttcctttgttggtttatga 219  Q
    |||||||||||||   | || |||||||||||||||| |||||||| ||||||||||| ||||||||| |||| ||||||||||||||||||||||||||    
T  1842793 tcattaatgaggtaattattctctctcaaataaatcataggaatgttgtcaaactcttggggtgttgtttagagacagaagttcctttgttggtttatga 1842892  T
Q  220 gtttgttagcaatggtactctttctgaatttattcacacaaaagg---taagacgaatgatccaacttggaagactcgtcttaagatagccgcaga 312  Q
     ||||||| |||||| || |||||||  ||||| |||||| || |   ||||  |||| ||  ||| ||||| |||||||||||||||||||||||    
T  1842893 atttgttaccaatggcaccctttctggttttatacacacacaaagtaataaggtgaataatgaaacatggaaaactcgtcttaagatagccgcaga 1842988  T

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Target: chr1; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 107 - 242
Target Start/End: Complemental strand, 9170901 - 9170766
Alignment:
Q  107 caaattgaacaattcattaatgaggtggatgttgtctctcaaataaatcacaggaatgtggtcaaactcttagggtgttgtctagaaacagaagttcctt 206  Q
    |||||||| ||||||||||||||||| | |||| |  | ||||||||||| |||||||| ||||||||| |||||||||||||||| |||||||||||||    
T  9170901 caaattgagcaattcattaatgaggtagttgttctgacccaaataaatcataggaatgttgtcaaactcctagggtgttgtctagagacagaagttcctt 9170802  T
Q  207 tgttggtttatgagtttgttagcaatggtactcttt 242  Q
      ||||| || || ||||||||||| ||||| ||||    
T  9170801 cattggtgtacgaatttgttagcaacggtacacttt 9170766  T

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Target: chr1; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 9200558 - 9200333
Alignment:
Q  17 ggtaaaggaggttttggtacagtttacaaaggggaacttgatgataatagaattgttgctatcaaaaagtctaaaacaatagacaaaagccaaattgaac 116  Q
    |||| ||||||||||||||||||||||||||| |   |   |||||| | |||||| ||| | ||||| || |||| ||| |||  ||  |||||||| |    
T  9200558 ggtagaggaggttttggtacagtttacaaaggagttttacctgataacaaaattgtcgctgtaaaaaaatccaaaataattgacgcaaatcaaattgagc 9200459  T
Q  117 aattcattaatgaggtggatgttgtctctcaaataaatcacaggaatgtggtcaaactcttagggtgttgtctagaaacagaagttcctttgttggttta 216  Q
    |||||||||||||||| | |||| |  | ||||||||||| |||||||| ||||||||| |||| ||||||||||| |||||||||||||  || || ||    
T  9200458 aattcattaatgaggtagttgttctgacccaaataaatcataggaatgttgtcaaactcctaggctgttgtctagagacagaagttccttcattagtgta 9200359  T
Q  217 tgagtttgttagcaatggtactcttt 242  Q
     || ||||||||||| ||||| ||||    
T  9200358 cgaatttgttagcaacggtacacttt 9200333  T

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Target: chr1; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 67 - 231
Target Start/End: Complemental strand, 9219024 - 9218860
Alignment:
Q  67 aattgttgctatcaaaaagtctaaaacaatagacaaaagccaaattgaacaattcattaatgaggtggatgttgtctctcaaataaatcacaggaatgtg 166  Q
    |||||| ||| |||||||||| |||| |||||||  ||  || || || ||||||||||||||||| | |||| | || ||||||||||| ||||| ||     
T  9219024 aattgtcgctgtcaaaaagtccaaaataatagacgcaaatcagatcgagcaattcattaatgaggtagttgttctgtcccaaataaatcataggaacgtt 9218925  T
Q  167 gtcaaactcttagggtgttgtctagaaacagaagttcctttgttggtttatgagtttgttagcaa 231  Q
    |||||||| |||||||||||| | || ||||||||||||| |||||| ||||| |||||||||||    
T  9218924 gtcaaacttttagggtgttgtttggagacagaagttccttcgttggtgtatgaatttgttagcaa 9218860  T

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Target: chr1; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 59 - 242
Target Start/End: Original strand, 9118329 - 9118512
Alignment:
Q  59 gataatagaattgttgctatcaaaaagtctaaaacaatagacaaaagccaaattgaacaattcattaatgaggtggatgttgtctctcaaataaatcaca 158  Q
    ||||| ||||| || ||| |||||||||| | || |||||||  ||  ||||| || ||||||||||||||||| | | || | || ||||||||||| |    
T  9118329 gataacagaatcgtggctgtcaaaaagtccagaataatagacgcaaatcaaatcgagcaattcattaatgaggtagttattctgtcccaaataaatcata 9118428  T
Q  159 ggaatgtggtcaaactcttagggtgttgtctagaaacagaagttcctttgttggtttatgagtttgttagcaatggtactcttt 242  Q
    ||||||| |||||||| |||||||||||| |||| |||||||||||||  ||||| ||||| || |||||| | ||||| ||||    
T  9118429 ggaatgttgtcaaacttttagggtgttgtttagagacagaagttccttccttggtctatgaattcgttagccacggtacacttt 9118512  T

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Target: chr1; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 107 - 242
Target Start/End: Complemental strand, 9162075 - 9161940
Alignment:
Q  107 caaattgaacaattcattaatgaggtggatgttgtctctcaaataaatcacaggaatgtggtcaaactcttagggtgttgtctagaaacagaagttcctt 206  Q
    |||||||| || |||||||| ||||| | |||| | || ||||||||||| || ||||| ||||||||||| || |||||| |||| |||||||||||||    
T  9162075 caaattgagcagttcattaacgaggtagttgttctgtcccaaataaatcatagaaatgttgtcaaactcttgggatgttgtttagagacagaagttcctt 9161976  T
Q  207 tgttggtttatgagtttgttagcaatggtactcttt 242  Q
     |||||| ||||| || |||||||||||||| ||||    
T  9161975 cgttggtgtatgaattcgttagcaatggtacacttt 9161940  T

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Target: chr1; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 122 - 242
Target Start/End: Complemental strand, 9156148 - 9156028
Alignment:
Q  122 attaatgaggtggatgttgtctctcaaataaatcacaggaatgtggtcaaactcttagggtgttgtctagaaacagaagttcctttgttggtttatgagt 221  Q
    ||||||||||| | |||  | || |||||||||||||| ||||| ||||||||||| || |||||| |||| |||||||||||||  ||||||||||| |    
T  9156148 attaatgaggtagttgtcctatcccaaataaatcacagaaatgttgtcaaactcttgggatgttgtttagagacagaagttccttccttggtttatgaat 9156049  T
Q  222 ttgttagcaatggtactcttt 242  Q
    | |||||||||||||| ||||    
T  9156048 tcgttagcaatggtacacttt 9156028  T

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Target: chr1; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 116 - 242
Target Start/End: Complemental strand, 9229860 - 9229734
Alignment:
Q  116 caattcattaatgaggtggatgttgtctctcaaataaatcacaggaatgtggtcaaactcttagggtgttgtctagaaacagaagttcctttgttggttt 215  Q
    |||||||| |||||||||| |||| | || ||||||||||| || ||||| ||||||||||| || |||||| | || ||| ||||||||||  | ||||    
T  9229860 caattcataaatgaggtggttgttttgtcccaaataaatcatagaaatgttgtcaaactcttgggatgttgtttggagacacaagttcctttactagttt 9229761  T
Q  216 atgagtttgttagcaatggtactcttt 242  Q
    |||| ||| ||||||||||||| ||||    
T  9229760 atgaatttattagcaatggtacccttt 9229734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 5e-59; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 13 - 180
Target Start/End: Original strand, 37567642 - 37567809
Alignment:
Q  13 cataggtaaaggaggttttggtacagtttacaaaggggaacttgatgataatagaattgttgctatcaaaaagtctaaaacaatagacaaaagccaaatt 112  Q
    |||||||| |||||||||||||||||||| ||||||| |||| ||||||||||||| ||||||||||||||| || |||||||||||  ||||||||| |    
T  37567642 cataggtagaggaggttttggtacagttttcaaagggaaactagatgataatagaactgttgctatcaaaaaatccaaaacaatagatgaaagccaaaat 37567741  T
Q  113 gaacaattcattaatgaggtggatgttgtctctcaaataaatcacaggaatgtggtcaaactcttagg 180  Q
    |||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||    
T  37567742 gaacaattcattaatgaggtggacattgtctctcaaataaatcataggaatgtggtcaaactcttagg 37567809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 175 - 302
Target Start/End: Original strand, 37572119 - 37572246
Alignment:
Q  175 cttagggtgttgtctagaaacagaagttcctttgttggtttatgagtttgttagcaatggtactctttctgaatttattcacacaaaaggtaagacgaat 274  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||    
T  37572119 cttagggtgttgtctagaaacagaagttcctcggttggtttatgagtttgttagcaatggtactctttctgaatttatacacacacaaggtaagatgaat 37572218  T
Q  275 gatccaacttggaagactcgtcttaaga 302  Q
    |||||||||| ||| |||||||||||||    
T  37572219 gatccaacttagaaaactcgtcttaaga 37572246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 30105892 - 30105936
Alignment:
Q  155 cacaggaatgtggtcaaactcttagggtgttgtctagaaacagaa 199  Q
    ||||||||| | |||||||||||||| |||||||| |||||||||    
T  30105892 cacaggaatattgtcaaactcttaggctgttgtcttgaaacagaa 30105936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 158 - 237
Target Start/End: Original strand, 40597787 - 40597866
Alignment:
Q  158 aggaatgtggtcaaactcttagggtgttgtctagaaacagaagttcctttgttggtttatgagtttgttagcaatggtac 237  Q
    ||||||||||| |||||  |||| |||||| |||||||||||||||| ||| | |||||||| ||| ||  |||||||||    
T  40597787 aggaatgtggtaaaacttgtaggttgttgtttagaaacagaagttccattgcttgtttatgaatttattcccaatggtac 40597866  T

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