View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10117_low_11 (Length: 312)

Name: NF10117_low_11
Description: NF10117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10117_low_11
NF10117_low_11
[»] chr1 (11 HSPs)
chr1 (13-312)||(1856700-1856999)
chr1 (13-306)||(1816051-1816344)
chr1 (20-312)||(1868302-1868597)
chr1 (20-312)||(1842693-1842988)
chr1 (107-242)||(9170766-9170901)
chr1 (17-242)||(9200333-9200558)
chr1 (67-231)||(9218860-9219024)
chr1 (59-242)||(9118329-9118512)
chr1 (107-242)||(9161940-9162075)
chr1 (122-242)||(9156028-9156148)
chr1 (116-242)||(9229734-9229860)
[»] chr7 (3 HSPs)
chr7 (13-180)||(37567642-37567809)
chr7 (175-302)||(37572119-37572246)
chr7 (155-199)||(30105892-30105936)
[»] chr3 (1 HSPs)
chr3 (158-237)||(40597787-40597866)


Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 13 - 312
Target Start/End: Original strand, 1856700 - 1856999
Alignment:
Q  13 cataggtaaaggaggttttggtacagtttacaaaggggaacttgatgataatagaattgttgctatcaaaaagtctaaaacaatagacaaaagccaaatt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1856700 cataggtaaaggaggttttggtacagtttacaaaggggaacttgatgataatagaattgttgctatcaaaaagtctaaaacaatagacaaaagccaaatt 1856799  T
Q  113 gaacaattcattaatgaggtggatgttgtctctcaaataaatcacaggaatgtggtcaaactcttagggtgttgtctagaaacagaagttcctttgttgg 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1856800 gaacaattcattaatgaggtggatgttgtctctcaaataaatcacagaaatgtggtcaaactcttagggtgttgtctagaaacagaagttcctttgttgg 1856899  T
Q  213 tttatgagtttgttagcaatggtactctttctgaatttattcacacaaaaggtaagacgaatgatccaacttggaagactcgtcttaagatagccgcaga 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1856900 tttatgagtttgttagcaatggtactctttctgaatttattcacacaaaaggtaagacgaatgatccaacttggaagactcgtcttaagatagccgcaga 1856999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 13 - 306
Target Start/End: Complemental strand, 1816344 - 1816051
Alignment:
Q  13 cataggtaaaggaggttttggtacagtttacaaaggggaacttgatgataatagaattgttgctatcaaaaagtctaaaacaatagacaaaagccaaatt 112  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| |||||||||||    
T  1816344 cataggtagaggaggttttggtacagttttcaaaggggaacttgatgataatagaattgtggctatcaaaaagtccaaaacaatagacgaaagccaaatt 1816245  T
Q  113 gaacaattcattaatgaggtggatgttgtctctcaaataaatcacaggaatgtggtcaaactcttagggtgttgtctagaaacagaagttcctttgttgg 212  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  1816244 gaacaattcattaacgaggtggatgttgtctctcaaataaatcacaggaatgtggtcaaactcttggggtgttgtctagaaacagaagttcctttgttgg 1816145  T
Q  213 tttatgagtttgttagcaatggtactctttctgaatttattcacacaaaaggtaagacgaatgatccaacttggaagactcgtcttaagatagc 306  Q
    |||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||| ||||  |||||||| |||||||||| ||||||    
T  1816144 tttatgagtttgttagcaatggtactctttctgaatttcttcgcacacaaggtaagacgaacgatcttacttggaaaactcgtcttaggatagc 1816051  T

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Target: chr1; HSP #3
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 20 - 312
Target Start/End: Original strand, 1868302 - 1868597
Alignment:
Q  20 aaaggaggttttggtacagtttacaaaggggaacttgatgataatagaattgttgctatcaaaaagtctaaaacaatagacaaaagccaaattgaacaat 119  Q
    ||||| ||||||||||| |||| ||||||    || |||||||| ||||| |||||||||||||| || |||| |||||| | ||||||||| || ||||    
T  1868302 aaaggtggttttggtaccgttttcaaaggacttctagatgataaaagaatcgttgctatcaaaaaatcaaaaataatagatagaagccaaatcgatcaat 1868401  T
Q  120 tcattaatgaggtggatgttgtctctcaaataaatcacaggaatgtggtcaaactcttagggtgttgtctagaaacagaagttcctttgttggtttatga 219  Q
    ||||||||||||||| |||| |||||||||||||||| |||||||| ||||||||||| ||||||||| |||| ||||||||||||||||||||||||||    
T  1868402 tcattaatgaggtggttgttctctctcaaataaatcataggaatgttgtcaaactcttggggtgttgtttagagacagaagttcctttgttggtttatga 1868501  T
Q  220 gtttgttagcaatggtactctttctgaatttattcacacaaaagg---taagacgaatgatccaacttggaagactcgtcttaagatagccgcaga 312  Q
     ||||||| |||||| || |||||||  ||||| |||||| || |   ||||  |||| ||  ||| ||||| |||||||||||||||||||||||    
T  1868502 atttgttaccaatggcaccctttctggttttatacacacacaaagtaataaggtgaataatgaaacatggaaaactcgtcttaagatagccgcaga 1868597  T

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Target: chr1; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 20 - 312
Target Start/End: Original strand, 1842693 - 1842988
Alignment:
Q  20 aaaggaggttttggtacagtttacaaaggggaacttgatgataatagaattgttgctatcaaaaagtctaaaacaatagacaaaagccaaattgaacaat 119  Q
    ||||| ||||||||||| |||||||||||    || |||||||| ||||| |||||||||||||| || |||| |||||| | |||||||||  | ||||    
T  1842693 aaaggtggttttggtactgtttacaaaggatttctagatgataaaagaatcgttgctatcaaaaaatcaaaaataatagatagaagccaaatcaatcaat 1842792  T
Q  120 tcattaatgaggtggatgttgtctctcaaataaatcacaggaatgtggtcaaactcttagggtgttgtctagaaacagaagttcctttgttggtttatga 219  Q
    |||||||||||||   | || |||||||||||||||| |||||||| ||||||||||| ||||||||| |||| ||||||||||||||||||||||||||    
T  1842793 tcattaatgaggtaattattctctctcaaataaatcataggaatgttgtcaaactcttggggtgttgtttagagacagaagttcctttgttggtttatga 1842892  T
Q  220 gtttgttagcaatggtactctttctgaatttattcacacaaaagg---taagacgaatgatccaacttggaagactcgtcttaagatagccgcaga 312  Q
     ||||||| |||||| || |||||||  ||||| |||||| || |   ||||  |||| ||  ||| ||||| |||||||||||||||||||||||    
T  1842893 atttgttaccaatggcaccctttctggttttatacacacacaaagtaataaggtgaataatgaaacatggaaaactcgtcttaagatagccgcaga 1842988  T

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Target: chr1; HSP #5
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 107 - 242
Target Start/End: Complemental strand, 9170901 - 9170766
Alignment:
Q  107 caaattgaacaattcattaatgaggtggatgttgtctctcaaataaatcacaggaatgtggtcaaactcttagggtgttgtctagaaacagaagttcctt 206  Q
    |||||||| ||||||||||||||||| | |||| |  | ||||||||||| |||||||| ||||||||| |||||||||||||||| |||||||||||||    
T  9170901 caaattgagcaattcattaatgaggtagttgttctgacccaaataaatcataggaatgttgtcaaactcctagggtgttgtctagagacagaagttcctt 9170802  T
Q  207 tgttggtttatgagtttgttagcaatggtactcttt 242  Q
      ||||| || || ||||||||||| ||||| ||||    
T  9170801 cattggtgtacgaatttgttagcaacggtacacttt 9170766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 17 - 242
Target Start/End: Complemental strand, 9200558 - 9200333
Alignment:
Q  17 ggtaaaggaggttttggtacagtttacaaaggggaacttgatgataatagaattgttgctatcaaaaagtctaaaacaatagacaaaagccaaattgaac 116  Q
    |||| ||||||||||||||||||||||||||| |   |   |||||| | |||||| ||| | ||||| || |||| ||| |||  ||  |||||||| |    
T  9200558 ggtagaggaggttttggtacagtttacaaaggagttttacctgataacaaaattgtcgctgtaaaaaaatccaaaataattgacgcaaatcaaattgagc 9200459  T
Q  117 aattcattaatgaggtggatgttgtctctcaaataaatcacaggaatgtggtcaaactcttagggtgttgtctagaaacagaagttcctttgttggttta 216  Q
    |||||||||||||||| | |||| |  | ||||||||||| |||||||| ||||||||| |||| ||||||||||| |||||||||||||  || || ||    
T  9200458 aattcattaatgaggtagttgttctgacccaaataaatcataggaatgttgtcaaactcctaggctgttgtctagagacagaagttccttcattagtgta 9200359  T
Q  217 tgagtttgttagcaatggtactcttt 242  Q
     || ||||||||||| ||||| ||||    
T  9200358 cgaatttgttagcaacggtacacttt 9200333  T

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Target: chr1; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 67 - 231
Target Start/End: Complemental strand, 9219024 - 9218860
Alignment:
Q  67 aattgttgctatcaaaaagtctaaaacaatagacaaaagccaaattgaacaattcattaatgaggtggatgttgtctctcaaataaatcacaggaatgtg 166  Q
    |||||| ||| |||||||||| |||| |||||||  ||  || || || ||||||||||||||||| | |||| | || ||||||||||| ||||| ||     
T  9219024 aattgtcgctgtcaaaaagtccaaaataatagacgcaaatcagatcgagcaattcattaatgaggtagttgttctgtcccaaataaatcataggaacgtt 9218925  T
Q  167 gtcaaactcttagggtgttgtctagaaacagaagttcctttgttggtttatgagtttgttagcaa 231  Q
    |||||||| |||||||||||| | || ||||||||||||| |||||| ||||| |||||||||||    
T  9218924 gtcaaacttttagggtgttgtttggagacagaagttccttcgttggtgtatgaatttgttagcaa 9218860  T

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Target: chr1; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 59 - 242
Target Start/End: Original strand, 9118329 - 9118512
Alignment:
Q  59 gataatagaattgttgctatcaaaaagtctaaaacaatagacaaaagccaaattgaacaattcattaatgaggtggatgttgtctctcaaataaatcaca 158  Q
    ||||| ||||| || ||| |||||||||| | || |||||||  ||  ||||| || ||||||||||||||||| | | || | || ||||||||||| |    
T  9118329 gataacagaatcgtggctgtcaaaaagtccagaataatagacgcaaatcaaatcgagcaattcattaatgaggtagttattctgtcccaaataaatcata 9118428  T
Q  159 ggaatgtggtcaaactcttagggtgttgtctagaaacagaagttcctttgttggtttatgagtttgttagcaatggtactcttt 242  Q
    ||||||| |||||||| |||||||||||| |||| |||||||||||||  ||||| ||||| || |||||| | ||||| ||||    
T  9118429 ggaatgttgtcaaacttttagggtgttgtttagagacagaagttccttccttggtctatgaattcgttagccacggtacacttt 9118512  T

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Target: chr1; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 107 - 242
Target Start/End: Complemental strand, 9162075 - 9161940
Alignment:
Q  107 caaattgaacaattcattaatgaggtggatgttgtctctcaaataaatcacaggaatgtggtcaaactcttagggtgttgtctagaaacagaagttcctt 206  Q
    |||||||| || |||||||| ||||| | |||| | || ||||||||||| || ||||| ||||||||||| || |||||| |||| |||||||||||||    
T  9162075 caaattgagcagttcattaacgaggtagttgttctgtcccaaataaatcatagaaatgttgtcaaactcttgggatgttgtttagagacagaagttcctt 9161976  T
Q  207 tgttggtttatgagtttgttagcaatggtactcttt 242  Q
     |||||| ||||| || |||||||||||||| ||||    
T  9161975 cgttggtgtatgaattcgttagcaatggtacacttt 9161940  T

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Target: chr1; HSP #10
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 122 - 242
Target Start/End: Complemental strand, 9156148 - 9156028
Alignment:
Q  122 attaatgaggtggatgttgtctctcaaataaatcacaggaatgtggtcaaactcttagggtgttgtctagaaacagaagttcctttgttggtttatgagt 221  Q
    ||||||||||| | |||  | || |||||||||||||| ||||| ||||||||||| || |||||| |||| |||||||||||||  ||||||||||| |    
T  9156148 attaatgaggtagttgtcctatcccaaataaatcacagaaatgttgtcaaactcttgggatgttgtttagagacagaagttccttccttggtttatgaat 9156049  T
Q  222 ttgttagcaatggtactcttt 242  Q
    | |||||||||||||| ||||    
T  9156048 tcgttagcaatggtacacttt 9156028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 116 - 242
Target Start/End: Complemental strand, 9229860 - 9229734
Alignment:
Q  116 caattcattaatgaggtggatgttgtctctcaaataaatcacaggaatgtggtcaaactcttagggtgttgtctagaaacagaagttcctttgttggttt 215  Q
    |||||||| |||||||||| |||| | || ||||||||||| || ||||| ||||||||||| || |||||| | || ||| ||||||||||  | ||||    
T  9229860 caattcataaatgaggtggttgttttgtcccaaataaatcatagaaatgttgtcaaactcttgggatgttgtttggagacacaagttcctttactagttt 9229761  T
Q  216 atgagtttgttagcaatggtactcttt 242  Q
    |||| ||| ||||||||||||| ||||    
T  9229760 atgaatttattagcaatggtacccttt 9229734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 116; Significance: 5e-59; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 13 - 180
Target Start/End: Original strand, 37567642 - 37567809
Alignment:
Q  13 cataggtaaaggaggttttggtacagtttacaaaggggaacttgatgataatagaattgttgctatcaaaaagtctaaaacaatagacaaaagccaaatt 112  Q
    |||||||| |||||||||||||||||||| ||||||| |||| ||||||||||||| ||||||||||||||| || |||||||||||  ||||||||| |    
T  37567642 cataggtagaggaggttttggtacagttttcaaagggaaactagatgataatagaactgttgctatcaaaaaatccaaaacaatagatgaaagccaaaat 37567741  T
Q  113 gaacaattcattaatgaggtggatgttgtctctcaaataaatcacaggaatgtggtcaaactcttagg 180  Q
    |||||||||||||||||||||||  ||||||||||||||||||| |||||||||||||||||||||||    
T  37567742 gaacaattcattaatgaggtggacattgtctctcaaataaatcataggaatgtggtcaaactcttagg 37567809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 175 - 302
Target Start/End: Original strand, 37572119 - 37572246
Alignment:
Q  175 cttagggtgttgtctagaaacagaagttcctttgttggtttatgagtttgttagcaatggtactctttctgaatttattcacacaaaaggtaagacgaat 274  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||||    
T  37572119 cttagggtgttgtctagaaacagaagttcctcggttggtttatgagtttgttagcaatggtactctttctgaatttatacacacacaaggtaagatgaat 37572218  T
Q  275 gatccaacttggaagactcgtcttaaga 302  Q
    |||||||||| ||| |||||||||||||    
T  37572219 gatccaacttagaaaactcgtcttaaga 37572246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 155 - 199
Target Start/End: Original strand, 30105892 - 30105936
Alignment:
Q  155 cacaggaatgtggtcaaactcttagggtgttgtctagaaacagaa 199  Q
    ||||||||| | |||||||||||||| |||||||| |||||||||    
T  30105892 cacaggaatattgtcaaactcttaggctgttgtcttgaaacagaa 30105936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 158 - 237
Target Start/End: Original strand, 40597787 - 40597866
Alignment:
Q  158 aggaatgtggtcaaactcttagggtgttgtctagaaacagaagttcctttgttggtttatgagtttgttagcaatggtac 237  Q
    ||||||||||| |||||  |||| |||||| |||||||||||||||| ||| | |||||||| ||| ||  |||||||||    
T  40597787 aggaatgtggtaaaacttgtaggttgttgtttagaaacagaagttccattgcttgtttatgaatttattcccaatggtac 40597866  T

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