View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF10117_low_13 (Length: 268)
Name: NF10117_low_13
Description: NF10117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF10117_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 17 - 261
Target Start/End: Original strand, 37626984 - 37627228
Alignment:
| Q |
17 |
aaatgctacattttgtaactaatttattggattttgtttaggtggtcgaaagagttgggacttattgaaagactaagttttgcaagagataggccaacag |
116 |
Q |
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| T |
37626984 |
aaatgctacattttgtaactaatttattggattttgtttaggtggtcgaaagagttgggacttattgaaagactaagttttgcaagagatagaccaacag |
37627083 |
T |
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| Q |
117 |
agtgtttcttatggacagtggggatatttccagaaccatgttattcaaattgtcgtattgaacttacaaaaaccatttgcattttggatgttattgatga |
216 |
Q |
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| T |
37627084 |
agtgtttcttatggacagtggggatatttccagaaccatgttattcaaattgtcgtattgaacttacaaaaaccatttgcattttggatgttattgatga |
37627183 |
T |
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| Q |
217 |
catctttgacaattatggtacattagaggatcttgttcttctcac |
261 |
Q |
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| T |
37627184 |
catctttgacaattatggtacattagaggatcttgttcttttcac |
37627228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 17 - 256
Target Start/End: Original strand, 37618571 - 37618809
Alignment:
| Q |
17 |
aaatgctacattttgtaactaatttattggattttgtttaggtggtcgaaagagttgggacttattgaaagactaagttttgcaagagataggccaacag |
116 |
Q |
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| T |
37618571 |
aaatgctacatttcataactagtttatttgattt-gtttaggtggtggaaagagttgggacttgttgaaaaacttggttttgcaagagatagaccaacag |
37618669 |
T |
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| Q |
117 |
agtgtttcttatggacagtggggatatttccagaaccatgttattcaaattgtcgtattgaacttacaaaaaccatttgcattttggatgttattgatga |
216 |
Q |
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| T |
37618670 |
agtgcttcttatggacagtagggatatttccagaaccatgtcattcaaattgccgcatagaacttacaaaaaccatatgtattttgctagtaatggatga |
37618769 |
T |
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| Q |
217 |
catctttgacaattatggtacattagaggatcttgttctt |
256 |
Q |
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| T |
37618770 |
tatctttgacacttatggaacattagatgaacttgttctt |
37618809 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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