View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF10117_low_14 (Length: 250)

Name: NF10117_low_14
Description: NF10117
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF10117_low_14
NF10117_low_14
[»] scaffold0238 (1 HSPs)
scaffold0238 (9-250)||(26310-26560)
[»] chr1 (11 HSPs)
chr1 (14-250)||(13614488-13614733)
chr1 (9-250)||(20508228-20508478)
chr1 (16-182)||(13438928-13439094)
chr1 (14-184)||(13554851-13555021)
chr1 (7-184)||(15893650-15893827)
chr1 (14-173)||(13689022-13689181)
chr1 (14-180)||(19134070-19134236)
chr1 (14-180)||(20380205-20380371)
chr1 (14-180)||(13519489-13519655)
chr1 (11-114)||(16446191-16446294)
chr1 (147-184)||(16446318-16446355)
[»] chr6 (1 HSPs)
chr6 (14-184)||(22271167-22271337)
[»] scaffold0006 (2 HSPs)
scaffold0006 (9-173)||(61817-61981)
scaffold0006 (16-180)||(177344-177508)
[»] scaffold0069 (2 HSPs)
scaffold0069 (14-180)||(59994-60160)
scaffold0069 (17-180)||(44898-45061)
[»] chr8 (1 HSPs)
chr8 (14-180)||(20766542-20766708)
[»] chr2 (1 HSPs)
chr2 (14-184)||(38049000-38049170)


Alignment Details
Target: scaffold0238 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 26310 - 26560
Alignment:
Q  9 agcataggatgatccagtggaaagtcttcctgccatatatgctcgagcttttccaattcaaaaagccataattttcttatttgctttgaaatttgcatac 108  Q
    |||| |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26310 agcagaggatgatccagtggaaagtcttcctgccagatgtgctcgagcttttccaattcaaaaagccataattttcttatttgctttgaaatttgcatac 26409  T
Q  109 tgagatgatcagtggttcctttagttgggaacaatacgtcaaaagaactattacgcacttgaaatatttcaagat---------tcttgtgaagatattc 199  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||||||         ||||||||||||||||    
T  26410 tgagatgatcagtggttcctttagttgggaacaatacgtcaaaggaactattacgcacttgaaatgcttcaagattaggaaatatcttgtgaagatattc 26509  T
Q  200 attcaaaaaagtaattggagtttcatcaaacaattgcaaacgaacatattc 250  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26510 attcaaaaaagtaattggagtttcatcaaacaattgcaaacgaacatattc 26560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 190; Significance: 1e-103; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 14 - 250
Target Start/End: Complemental strand, 13614733 - 13614488
Alignment:
Q  14 aggatgatccagtggaaagtcttcctgccatatatgctcgagcttttccaattcaaaaagccataattttcttatttgctttgaaatttgcatactgaga 113  Q
    |||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13614733 aggatgattcagtggaaagtcttcctgccagatgtgctcgagcttttccaattcaaaaagccataattttcttatttgctttgaaatttgcatactgaga 13614634  T
Q  114 tgatcagtggttcctttagttgggaacaatacgtcaaaagaactattacgcacttgaaatatttcaagat---------tcttgtgaagatattcattca 204  Q
    |||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||         |||||||||||||||||||||    
T  13614633 tgatcagtggttcctttagttgggaacaatacgttaaaggaactattacgcacttgaaatgtttcaagattaggaaatatcttgtgaagatattcattca 13614534  T
Q  205 aaaaagtaattggagtttcatcaaacaattgcaaacgaacatattc 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  13614533 aaaaagtaattggagtttcatcaaacaattgcaaacgaacatattc 13614488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 250
Target Start/End: Original strand, 20508228 - 20508478
Alignment:
Q  9 agcataggatgatccagtggaaagtcttcctgccatatatgctcgagcttttccaattcaaaaagccataattttcttatttgctttgaaatttgcatac 108  Q
    |||| |||||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20508228 agcagaggatgatccagtggaaagttttcctgccagatgtgctcgagcttttccaattcaaaaagccataattttcttatttgctttgaaatttgcatac 20508327  T
Q  109 tgagatgatcagtggttcctttagttgggaacaatacgtcaaaagaactattacgcacttgaaatatttcaagat---------tcttgtgaagatattc 199  Q
    |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||||||         |||||||||||| |||    
T  20508328 tgagatgatcagtggttcctttagttgggaacaatacgacaaaggaactattacgcacttgaaatgtttcaagattaggaaatatcttgtgaagatgttc 20508427  T
Q  200 attcaaaaaagtaattggagtttcatcaaacaattgcaaacgaacatattc 250  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20508428 attcaaaaaagtaattggagtttcatcaaacaattgcaaacgaacatattc 20508478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 16 - 182
Target Start/End: Complemental strand, 13439094 - 13438928
Alignment:
Q  16 gatgatccagtggaaagtcttcctgccatatatgctcgagcttttccaattcaaaaagccataattttcttatttgctttgaaatttgcatactgagatg 115  Q
    ||||||||| |||||||||| ||||||| |  |||| |||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||||    
T  13439094 gatgatccaatggaaagtctacctgccaaacgtgcttgagcttttccaattcaaaaagccacaactttcttatttgctttgaaagttgcatactgagatg 13438995  T
Q  116 atcagtggttcctttagttgggaacaatacgtcaaaagaactattacgcacttgaaatatttcaaga 182  Q
    |||||||||||||||||| |||||||||    |||||||||||||||||||||||||| ||||||||    
T  13438994 atcagtggttcctttagtggggaacaatgttgcaaaagaactattacgcacttgaaatgtttcaaga 13438928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 14 - 184
Target Start/End: Complemental strand, 13555021 - 13554851
Alignment:
Q  14 aggatgatccagtggaaagtcttcctgccatatatgctcgagcttttccaattcaaaaagccataattttcttatttgctttgaaatttgcatactgaga 113  Q
    ||||||||||| |||||| ||||| ||||| || | ||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||    
T  13555021 aggatgatccaatggaaaatcttcatgccagatgtactcgagcttttccaattcaaaaagccacaaatttcttattttctttgaaatttgcatactgaga 13554922  T
Q  114 tgatcagtggttcctttagttgggaacaatacgtcaaaagaactattacgcacttgaaatatttcaagatt 184  Q
    |||||||| |||| |||||| ||||||||||  ||||| ||||| ||||||||||||||| ||||||||||    
T  13554921 tgatcagttgttcttttagtggggaacaatatttcaaaggaactgttacgcacttgaaatgtttcaagatt 13554851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 7 - 184
Target Start/End: Original strand, 15893650 - 15893827
Alignment:
Q  7 gaagcataggatgatccagtggaaagtcttcctgccatatatgctcgagcttttccaattcaaaaagccataattttcttatttgctttgaaatttgcat 106  Q
    |||||| |||||||||| ||||||||| |||||||||||| ||||||||||||||||||||||||| ||| || |||||||||||| ||||||||||| |    
T  15893650 gaagcagaggatgatccggtggaaagttttcctgccatatgtgctcgagcttttccaattcaaaaatccacaaatttcttatttgcattgaaatttgcgt 15893749  T
Q  107 actgagatgatcagtggttcctttagttgggaacaatacgtcaaaagaactattacgcacttgaaatatttcaagatt 184  Q
    | ||||||||| ||||||||||||||| ||||||||||  ||||| |||| |||||  || |||||| ||||||||||    
T  15893750 agtgagatgataagtggttcctttagtggggaacaatatttcaaaggaaccattacaaacatgaaatgtttcaagatt 15893827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 14 - 173
Target Start/End: Complemental strand, 13689181 - 13689022
Alignment:
Q  14 aggatgatccagtggaaagtcttcctgccatatatgctcgagcttttccaattcaaaaagccataattttcttatttgctttgaaatttgcatactgaga 113  Q
    ||||||||||| |||||| ||||||||||| || |||||||||||||||||||||||||||   ||  |||| ||||||||||||||||||||| |||||    
T  13689181 aggatgatccaatggaaattcttcctgccagatgtgctcgagcttttccaattcaaaaagcatcaacattctcatttgctttgaaatttgcatattgaga 13689082  T
Q  114 tgatcagtggttcctttagttgggaacaatacgtcaaaagaactattacgcacttgaaat 173  Q
    |||||||||| ||||||||| ||||||||||  ||||| ||||||||||| |||||||||    
T  13689081 tgatcagtggctcctttagtggggaacaatatttcaaaggaactattacggacttgaaat 13689022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 14 - 180
Target Start/End: Original strand, 19134070 - 19134236
Alignment:
Q  14 aggatgatccagtggaaagtcttcctgccatatatgctcgagcttttccaattcaaaaagccataattttcttatttgctttgaaatttgcatactgaga 113  Q
    ||||||||||| ||||||||||||||||||||  |||| |||||||||||||||||||||||| || ||||||||||| ||||| |||||||||||||||    
T  19134070 aggatgatccaatggaaagtcttcctgccatacgtgcttgagcttttccaattcaaaaagccacaactttcttatttgatttgacatttgcatactgaga 19134169  T
Q  114 tgatcagtggttcctttagttgggaacaatacgtcaaaagaactattacgcacttgaaatatttcaa 180  Q
    | |   |||| ||||||||  ||| |||||   ||||||||||||||||||||||||||| ||||||    
T  19134170 taacttgtggctcctttagcggggtacaatgtttcaaaagaactattacgcacttgaaatgtttcaa 19134236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 14 - 180
Target Start/End: Complemental strand, 20380371 - 20380205
Alignment:
Q  14 aggatgatccagtggaaagtcttcctgccatatatgctcgagcttttccaattcaaaaagccataattttcttatttgctttgaaatttgcatactgaga 113  Q
    ||||||||||| |||||||||||||||||| || |||| |||||| ||||||||||||||||| || ||||||||||| |||||  ||||||||||||||    
T  20380371 aggatgatccaatggaaagtcttcctgccagatgtgcttgagcttgtccaattcaaaaagccacaactttcttatttgatttgacgtttgcatactgaga 20380272  T
Q  114 tgatcagtggttcctttagttgggaacaatacgtcaaaagaactattacgcacttgaaatatttcaa 180  Q
    | |   |||||||||||||| | |||||||   ||||||||||||||||||||||||||| ||||||    
T  20380271 taacttgtggttcctttagtggtgaacaatgtttcaaaagaactattacgcacttgaaatgtttcaa 20380205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 14 - 180
Target Start/End: Complemental strand, 13519655 - 13519489
Alignment:
Q  14 aggatgatccagtggaaagtcttcctgccatatatgctcgagcttttccaattcaaaaagccataattttcttatttgctttgaaatttgcatactgaga 113  Q
    |||||||| ||||||||||||||||||||| || || || |||||||||| ||||||||   | || ||||||||||| ||||| ||||||| ||| |||    
T  13519655 aggatgattcagtggaaagtcttcctgccaaatgtgttctagcttttccatttcaaaaaaaaacaactttcttatttgatttgacatttgcaaactaaga 13519556  T
Q  114 tgatcagtggttcctttagttgggaacaatacgtcaaaagaactattacgcacttgaaatatttcaa 180  Q
    | |   |||||||||||||| |||||||||   ||||||||||||||||||||||||||| ||||||    
T  13519555 taacttgtggttcctttagtggggaacaatgtttcaaaagaactattacgcacttgaaatgtttcaa 13519489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 11 - 114
Target Start/End: Original strand, 16446191 - 16446294
Alignment:
Q  11 cataggatgatccagtggaaagtcttcctgccatatatgctcgagcttttccaattcaaaaagccataattttcttatttgctttgaaatttgcatactg 110  Q
    |||||||||||||| ||| ||| |||||||||| || |||| ||| |||||||||||||||||||| || |||||||||||||||||| |||||| | ||    
T  16446191 cataggatgatccaatgggaagacttcctgccagatgtgcttgagattttccaattcaaaaagccacaagtttcttatttgctttgaagtttgcaaattg 16446290  T
Q  111 agat 114  Q
    ||||    
T  16446291 agat 16446294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 147 - 184
Target Start/End: Original strand, 16446318 - 16446355
Alignment:
Q  147 tcaaaagaactattacgcacttgaaatatttcaagatt 184  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  16446318 tcaaatgaactattacgcacttgaaatgtttcaagatt 16446355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 14 - 184
Target Start/End: Original strand, 22271167 - 22271337
Alignment:
Q  14 aggatgatccagtggaaagtcttcctgccatatatgctcgagcttttccaattcaaaaagccataattttcttatttgctttgaaatttgcatactgaga 113  Q
    ||||||||||| |||||||||| |||||||||  |||| ||| |||||||| ||||||||||| || |||||||||||| |||||| |||||||||||||    
T  22271167 aggatgatccaatggaaagtctacctgccatacgtgcttgagattttccaaatcaaaaagccacaactttcttatttgccttgaaagttgcatactgaga 22271266  T
Q  114 tgatcagtggttcctttagttgggaacaatacgtcaaaagaactattacgcacttgaaatatttcaagatt 184  Q
    |||||||||||||||||||| ||||||||||  ||||| ||||||||||||||||||||| ||||||||||    
T  22271267 tgatcagtggttcctttagtggggaacaatatttcaaaggaactattacgcacttgaaatgtttcaagatt 22271337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 9 - 173
Target Start/End: Complemental strand, 61981 - 61817
Alignment:
Q  9 agcataggatgatccagtggaaagtcttcctgccatatatgctcgagcttttccaattcaaaaagccataattttcttatttgctttgaaatttgcatac 108  Q
    |||| ||||||||||| |||||||||||| |||||||||  |||||||||||||||||||||||||   ||  |||| |||||||||||||||| ||||     
T  61981 agcagaggatgatccaatggaaagtcttcatgccatataaactcgagcttttccaattcaaaaagcatcaacattctcatttgctttgaaattttcatat 61882  T
Q  109 tgagatgatcagtggttcctttagttgggaacaatacgtcaaaagaactattacgcacttgaaat 173  Q
    ||||||||||||||| ||||||||| ||||||||||  ||||| ||||||||||| |||||||||    
T  61881 tgagatgatcagtggctcctttagtggggaacaatatttcaaaggaactattacggacttgaaat 61817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006; HSP #2
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 16 - 180
Target Start/End: Complemental strand, 177508 - 177344
Alignment:
Q  16 gatgatccagtggaaagtcttcctgccatatatgctcgagcttttccaattcaaaaagccataattttcttatttgctttgaaatttgcatactgagatg 115  Q
    ||||||||| |||||| ||||||||||| || |||| |||||| ||||||||||||||||| |  ||||||||||| ||||| ||||||||||||||||     
T  177508 gatgatccaatggaaaatcttcctgccagatgtgcttgagcttgtccaattcaaaaagccacatctttcttatttgatttgacatttgcatactgagata 177409  T
Q  116 atcagtggttcctttagttgggaacaatacgtcaaaagaactattacgcacttgaaatatttcaa 180  Q
    |    ||| ||||||||| |||||||||   ||||||||||||||||||||||||||| ||||||    
T  177408 acttctggctcctttagtggggaacaatgtttcaaaagaactattacgcacttgaaatgtttcaa 177344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 14 - 180
Target Start/End: Complemental strand, 60160 - 59994
Alignment:
Q  14 aggatgatccagtggaaagtcttcctgccatatatgctcgagcttttccaattcaaaaagccataattttcttatttgctttgaaatttgcatactgaga 113  Q
    ||||||||||| |||||||||||||||||| || |||| |||||| ||||||||||||||||| || ||||||||||| |||||  ||||||||||||||    
T  60160 aggatgatccaatggaaagtcttcctgccagatgtgcttgagcttgtccaattcaaaaagccacaactttcttatttgatttgacgtttgcatactgaga 60061  T
Q  114 tgatcagtggttcctttagttgggaacaatacgtcaaaagaactattacgcacttgaaatatttcaa 180  Q
    | |   |||||||||||||| | |||||||   ||||||||||||||||||||||||||| ||||||    
T  60060 taacttgtggttcctttagtggtgaacaatgtttcaaaagaactattacgcacttgaaatgtttcaa 59994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069; HSP #2
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 17 - 180
Target Start/End: Complemental strand, 45061 - 44898
Alignment:
Q  17 atgatccagtggaaagtcttcctgccatatatgctcgagcttttccaattcaaaaagccataattttcttatttgctttgaaatttgcatactgagatga 116  Q
    |||||||| |||||||||||||||||| |  |||| |||||| ||||||||||||||||| || ||||||||||| |||||  ||||||||||||||| |    
T  45061 atgatccaatggaaagtcttcctgccagacgtgcttgagcttgtccaattcaaaaagccacaactttcttatttgatttgacgtttgcatactgagataa 44962  T
Q  117 tcagtggttcctttagttgggaacaatacgtcaaaagaactattacgcacttgaaatatttcaa 180  Q
       |||| ||||||||| |||||||||   |||||||||||||||| ||||| |||| ||||||    
T  44961 cttgtggctcctttagtggggaacaatgtttcaaaagaactattacacactttaaatgtttcaa 44898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 14 - 180
Target Start/End: Original strand, 20766542 - 20766708
Alignment:
Q  14 aggatgatccagtggaaagtcttcctgccatatatgctcgagcttttccaattcaaaaagccataattttcttatttgctttgaaatttgcatactgaga 113  Q
    ||||| ||||| |||||||||||||||||| | ||| | |||||| ||||||||||||||||| || ||||||||||| ||||| |||||||||||||||    
T  20766542 aggataatccaatggaaagtcttcctgccagacatggttgagcttgtccaattcaaaaagccacaaatttcttatttgatttgacatttgcatactgaga 20766641  T
Q  114 tgatcagtggttcctttagttgggaacaatacgtcaaaagaactattacgcacttgaaatatttcaa 180  Q
    | |   |||| ||||||||  |||||||||   ||||||||||||||||||||||||||| ||||||    
T  20766642 taacttgtggctcctttagcggggaacaatgtttcaaaagaactattacgcacttgaaatgtttcaa 20766708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 14 - 184
Target Start/End: Original strand, 38049000 - 38049170
Alignment:
Q  14 aggatgatccagtggaaagtcttcctgccatatatgctcgagcttttccaattcaaaaagccataattttcttatttgctttgaaatttgcatactgaga 113  Q
    |||||| |||| |||||||||||||||||| |  |||| |||||||||||| ||||||||    ||  |||||||||| ||| | |||||| ||||||||    
T  38049000 aggatggtccaatggaaagtcttcctgccagacgtgcttgagcttttccaaatcaaaaagaatcaacattcttatttgatttaacatttgcttactgaga 38049099  T
Q  114 tgatcagtggttcctttagttgggaacaatacgtcaaaagaactattacgcacttgaaatatttcaagatt 184  Q
    | | | |||||| ||||||| |||||||||   ||||||||||||||||||||||||||| ||||||||||    
T  38049100 taagctgtggttactttagtagggaacaatgtttcaaaagaactattacgcacttgaaatgtttcaagatt 38049170  T

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